Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_N12
         (230 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    20   4.6  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               19   6.1  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    19   8.0  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    19   8.0  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 19.8 bits (39), Expect = 4.6
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -2

Query: 175 KIPQQTFISYRTN 137
           ++PQ T I Y TN
Sbjct: 205 ELPQFTIIGYETN 217


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 19.4 bits (38), Expect = 6.1
 Identities = 5/9 (55%), Positives = 7/9 (77%)
 Frame = -3

Query: 39  WLLILPRWI 13
           W+ +LP WI
Sbjct: 502 WMPLLPNWI 510


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 19.0 bits (37), Expect = 8.0
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +2

Query: 62  LRYTEGKNMCCGRRRIFTGCSPAGD 136
           L  T    +C  RRR  +G + +GD
Sbjct: 527 LAATLAGGLCPHRRRANSGSTSSGD 551


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 19.0 bits (37), Expect = 8.0
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +3

Query: 69  ILKEKICAADDDESSQAVARR 131
           ILK+ I   DDD     V +R
Sbjct: 16  ILKKDIIIQDDDVECTMVEKR 36


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,493
Number of Sequences: 438
Number of extensions: 1213
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 46
effective length of database: 126,195
effective search space used:  3785850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)