Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_N09
(587 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC821.05 |||translation initiation factor eIF3h|Schizosaccharo... 98 1e-21
SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyce... 27 1.5
SPAC3C7.09 |set8||lysine methyltransferase Set8 |Schizosaccharom... 27 2.0
SPCC1795.02c ||SPCC895.01|CaCA proton/calcium exchanger|Schizosa... 27 2.7
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9... 26 3.5
SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomy... 26 3.5
SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr... 26 4.7
SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomy... 25 6.2
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf... 25 6.2
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe... 25 8.2
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom... 25 8.2
>SPAC821.05 |||translation initiation factor
eIF3h|Schizosaccharomyces pombe|chr 1|||Manual
Length = 357
Score = 97.9 bits (233), Expect = 1e-21
Identities = 60/194 (30%), Positives = 106/194 (54%), Gaps = 13/194 (6%)
Frame = +1
Query: 43 TSRRVPDNE-PTITYVQCDGLAVMKIVKHCHEESCSNMEVAQCALLGLVVENRLEITNCF 219
TS VP+ E P I V+ + L VM I+KHC + + + Q L+G+ ++ L++++ F
Sbjct: 5 TSLNVPELESPPIERVELESLLVMNIIKHCRDSFPNMGTIGQ--LVGIDIDGVLQVSSSF 62
Query: 220 PFPK----HDDTMDE-------EEYQLDMMRRLRRVNVDHFHVGWYQSADVGNFLSQSL- 363
P + +++ + + M+ RL+ + HVGWY A V +FLS
Sbjct: 63 ESPSVLENEESAVNKSVSGKARQAHTEAMLNRLQYIGAVTGHVGWYLGAYVSSFLSSPFF 122
Query: 364 LESQYHYQTSIEESVVVIYDTKKSARGFLTLKAYRLTPQAIAMYKEGDYTPDALRNLKIG 543
+E+QY YQ + S+ +YD +S+ G L ++AY+LTP+ +A ++E +T +L + +
Sbjct: 123 VETQYAYQKANPNSIAFLYDLSQSSNGTLYMRAYQLTPEFMAAHEEKTWTASSLNSHNLT 182
Query: 544 YESLFIEVPIVIRN 585
++ E+PIVI N
Sbjct: 183 PSNVIRELPIVIHN 196
>SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 568
Score = 27.5 bits (58), Expect = 1.5
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Frame = -3
Query: 345 VSYICTLVPSNMKMVNIDPAEPSHHVQLVLLFI---HCVIMLRKGEAIGYL 202
V YI VPSN+ M I+P +QL + + H V+ + G A Y+
Sbjct: 138 VGYIIFEVPSNLMMAFIEPRIWVSRIQLTIGVVGACHAVLGTKHGNAQSYV 188
>SPAC3C7.09 |set8||lysine methyltransferase Set8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 429
Score = 27.1 bits (57), Expect = 2.0
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -2
Query: 268 PIGTPLHPLCHHASERGSNWLSLNDSPQL 182
P+ P+ LC+H+S+ + W D+ QL
Sbjct: 187 PVLAPVIDLCNHSSKSNAKWSFSEDAMQL 215
>SPCC1795.02c ||SPCC895.01|CaCA proton/calcium
exchanger|Schizosaccharomyces pombe|chr 3|||Manual
Length = 412
Score = 26.6 bits (56), Expect = 2.7
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
Frame = +1
Query: 184 VVENRLEITNCFPFPKHD----DTMDEEEYQLDMMRRLRRVNV 300
+ +NRLE N F FP D + EY M R+L +NV
Sbjct: 7 IAKNRLEAMNSFNFPAQDRHERAPLLGSEYDHSMARQLSLLNV 49
>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
Srb9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1223
Score = 26.2 bits (55), Expect = 3.5
Identities = 18/64 (28%), Positives = 29/64 (45%)
Frame = -3
Query: 447 ESPSRLLSIIDNHHTLLN*GLIVIL*FKQRLTQEVSYICTLVPSNMKMVNIDPAEPSHHV 268
+SP LS I+N H LN + F + L L+ N K +++D + P + +
Sbjct: 705 KSPENYLSSINNGHHALNDNPPSQVNFSETLVNFSQPPRVLLKYNEKKLSLDSSAPENWI 764
Query: 267 QLVL 256
L L
Sbjct: 765 SLCL 768
>SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 656
Score = 26.2 bits (55), Expect = 3.5
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 481 AIAMYKEGDYTPDALRNLKIGYESLFIEVPIVI 579
AIA+ ++G +T RN KI + ++ V IVI
Sbjct: 553 AIAIIEQGIFTRSGKRNRKIKWRKNYLRVLIVI 585
>SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 591
Score = 25.8 bits (54), Expect = 4.7
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = +1
Query: 151 MEVAQCALLGLVVENRLEITNCFPFPKHDDTMDEEEYQLDMMRRLRRVNV 300
M+ + L GLV + +T + P H + + +++LD R RR+N+
Sbjct: 355 MDTTEELLSGLVKD----LTGSYKVPYHPEGPEGPKWELDFSRPWRRINM 400
>SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 396
Score = 25.4 bits (53), Expect = 6.2
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = -2
Query: 286 GAFASCPIGTPLHP-LCHHASERGSNWLSL 200
G F + + L P LCH ++RG +W +L
Sbjct: 366 GIFLASLVSLFLEPSLCHFQADRGRDWCAL 395
>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1339
Score = 25.4 bits (53), Expect = 6.2
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = +1
Query: 394 IEESVVVIYDTKKSARGFLTLKAYRLTPQAIAMYKEGDYTPDALRNLKIGY 546
+ + +VV YD K + F L+A TP+ E TP+ L+++ + +
Sbjct: 737 VRKDIVVQYDMKPDSPRFQQLRAQITTPEI-----EKQSTPEILKDVDVDF 782
>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 959
Score = 25.0 bits (52), Expect = 8.2
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 6/35 (17%)
Frame = -3
Query: 339 YIC-TLVPSNMK-----MVNIDPAEPSHHVQLVLL 253
++C T VP N+K M N +PA P H LV L
Sbjct: 192 FLCLTRVPDNVKSEEVAMANWEPAHPLHKSNLVTL 226
>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1562
Score = 25.0 bits (52), Expect = 8.2
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +1
Query: 43 TSRRVPDNEPTITYVQCD 96
T+R +P N+PT + CD
Sbjct: 405 TTRSIPANKPTFFWASCD 422
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,567,521
Number of Sequences: 5004
Number of extensions: 52530
Number of successful extensions: 120
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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