Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_N09
         (587 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0650 - 18411588-18411645,18412020-18412172,18412340-184124...   144   5e-35
07_01_0213 - 1573315-1573485,1573583-1573765,1573858-1574046,157...    29   2.1  
02_05_0256 + 27201483-27202499,27203297-27203375,27204617-272049...    29   3.6  

>04_03_0650 -
           18411588-18411645,18412020-18412172,18412340-18412407,
           18412499-18412600,18412695-18412766,18412843-18412891,
           18412971-18413104,18413488-18413554,18414471-18414574,
           18414677-18414793,18415538-18415647,18415763-18415772
          Length = 347

 Score =  144 bits (349), Expect = 5e-35
 Identities = 78/182 (42%), Positives = 111/182 (60%), Gaps = 5/182 (2%)
 Frame = +1

Query: 55  VPDNEPT-ITYVQCDGLAVMKIVKHCHEESCSNMEVAQCALLGLVVENRLEITNCFPFPK 231
           V +  P+ +  VQ +GLAV+KI+KHC EE    +   Q  LLGL V + LE+TNCFPFP 
Sbjct: 24  VTEEAPSPLRVVQMEGLAVLKIIKHC-EEFAPALVTGQ--LLGLDVGSVLEVTNCFPFPM 80

Query: 232 HDDT----MDEEEYQLDMMRRLRRVNVDHFHVGWYQSADVGNFLSQSLLESQYHYQTSIE 399
            +D      D   YQL+MMR LR VNVD+  VGWYQS  +G+F +  L+E+  +YQ +I 
Sbjct: 81  REDDEEADADGANYQLEMMRCLREVNVDNNTVGWYQSCLLGSFQTVELIETFMNYQENIR 140

Query: 400 ESVVVIYDTKKSARGFLTLKAYRLTPQAIAMYKEGDYTPDALRNLKIGYESLFIEVPIVI 579
             V ++YD  +S +G L LKA +LT   + +Y+    T + LR  K+ +  +F E+PI +
Sbjct: 141 RCVCIVYDPSRSNQGVLALKALKLTDSFMDLYRNNGLTGEKLREKKLSWVDIFEEIPIKV 200

Query: 580 RN 585
            N
Sbjct: 201 SN 202


>07_01_0213 -
           1573315-1573485,1573583-1573765,1573858-1574046,
           1574182-1574263,1574315-1574421,1575086-1575161,
           1575457-1575637,1575711-1575828
          Length = 368

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
 Frame = +1

Query: 313 VGWYQSADVGNFLSQSLLESQYH--YQTSIEESVVVIYDTKKSARGFLTLKAYR 468
           VGWY+S + G +   S  +S +H  ++     +++V  D  KSA G  T+ A+R
Sbjct: 166 VGWYRS-NPGFYGRPSNHDSVFHKAFEQLNPRAILVAVDPVKSATGNFTMNAFR 218


>02_05_0256 +
           27201483-27202499,27203297-27203375,27204617-27204946,
           27205029-27205198
          Length = 531

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +2

Query: 368 NHSITIKPQLRRVWWLSMILR 430
           +H IT KP   R+WW++ ++R
Sbjct: 246 HHIITTKPSSLRIWWVADLMR 266


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,060,804
Number of Sequences: 37544
Number of extensions: 366884
Number of successful extensions: 781
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 779
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)