Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_N09
         (587 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003740-3|AAC48137.2|  365|Caenorhabditis elegans Eukaryotic in...   124   6e-29
Z47808-5|CAA87773.1|  294|Caenorhabditis elegans Hypothetical pr...    38   0.004
AF025471-8|AAB71060.1| 1019|Caenorhabditis elegans Hypothetical ...    28   5.7  
AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical ...    27   7.5  

>AF003740-3|AAC48137.2|  365|Caenorhabditis elegans Eukaryotic
           initiation factor protein3.H protein.
          Length = 365

 Score =  124 bits (298), Expect = 6e-29
 Identities = 73/199 (36%), Positives = 118/199 (59%), Gaps = 19/199 (9%)
 Frame = +1

Query: 46  SRRVPDNEPTITYVQCDGLAVMKIVKHCHEE---SCSNMEVAQCA--LLGLVV--ENRLE 204
           S  V    P++ ++  D L VMKIVKH   E     S +    CA  L GLV   ++RLE
Sbjct: 2   STAVTITAPSVKHILLDSLVVMKIVKHVDSELHAGISEVSGDACAGVLTGLVFLEDSRLE 61

Query: 205 ITNCFPFPKHDDTMDEE-----EYQ-------LDMMRRLRRVNVDHFHVGWYQSADVGNF 348
           ITNCFP  +++  MD++     +Y+       LDM+R+ R +N+D+  VG+YQS   G  
Sbjct: 62  ITNCFPTVRNEPVMDDDANAAQQYEEQKQHEMLDMLRKFRTMNIDYEIVGFYQSHQFGAG 121

Query: 349 LSQSLLESQYHYQTSIEESVVVIYDTKKSARGFLTLKAYRLTPQAIAMYKEGDYTPDALR 528
            S  L+ES + YQ    E+VV+IYD  K+ +G L+L+A+RL+  A+ +  + D+ P+ ++
Sbjct: 122 FSHDLVESMFDYQAMGPENVVLIYDPIKTRQGQLSLRAWRLSTAALDLASKNDWRPELVK 181

Query: 529 NLKIGYESLFIEVPIVIRN 585
              + Y+++F E+PI+I++
Sbjct: 182 AAGLTYQNMFEELPIIIKS 200


>Z47808-5|CAA87773.1|  294|Caenorhabditis elegans Hypothetical
           protein D2013.7 protein.
          Length = 294

 Score = 38.3 bits (85), Expect = 0.004
 Identities = 22/96 (22%), Positives = 45/96 (46%), Gaps = 5/96 (5%)
 Frame = +1

Query: 133 EESCSNMEVAQC--ALLGLVVENRLEITNCFPFP---KHDDTMDEEEYQLDMMRRLRRVN 297
           + S  N    +C   L+G   +  +++TNCF  P    +DD   ++++   M+  L++ +
Sbjct: 26  KSSAKNTGQEKCMGTLMGYYEKGSIQVTNCFAIPFNESNDDLEIDDQFNQQMISALKKTS 85

Query: 298 VDHFHVGWYQSADVGNFLSQSLLESQYHYQTSIEES 405
            +   VGW+ +    +  S  L+   Y+ +   E S
Sbjct: 86  PNEQPVGWFLT--TSDITSSCLIYHDYYVRVITEAS 119


>AF025471-8|AAB71060.1| 1019|Caenorhabditis elegans Hypothetical
           protein R52.2 protein.
          Length = 1019

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +1

Query: 388 TSIEESV-VVIYDTKKSARGFLTLKAYRLTPQA-IAMYKEGDYTP 516
           T+I ES    I+ T+ S    LTL + + TP A IA   E + TP
Sbjct: 475 TAIAESQDFPIHSTENSTTSMLTLTSMKYTPDAPIAQLNEAEETP 519


>AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical
            protein F55F10.1 protein.
          Length = 4368

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 9/55 (16%)
 Frame = +1

Query: 88   QCDGLAVMKIVKHCHEESCS------NME-VAQCA--LLGLVVENRLEITNCFPF 225
            QCD  AV+K +K   EE CS      N+E +A+ A     +V ++ +++TNC  F
Sbjct: 3521 QCDIQAVVKSLKSIVEEHCSGEKRRKNLEGLAELAGITADIVEQSVIQLTNCLGF 3575


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,322,101
Number of Sequences: 27780
Number of extensions: 307878
Number of successful extensions: 690
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)