Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_N08
         (544 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces po...    54   1e-08
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    51   1e-07
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    49   4e-07
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    49   5e-07
SPBC17F3.01c |rga5|SPBC557.01|GTPase activating protein Rga5|Sch...    46   4e-06
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    34   0.016
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb...    27   1.8  
SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces...    27   2.4  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    27   2.4  
SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21...    26   4.1  
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    26   4.1  
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr...    25   5.5  
SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|ch...    25   5.5  
SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|ch...    25   5.5  
SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr 2...    25   5.5  
SPCC330.05c |ura4||orotidine 5'-phosphate decarboxylase Ura4 |Sc...    25   7.2  

>SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 374

 Score = 54.0 bits (124), Expect = 1e-08
 Identities = 41/135 (30%), Positives = 58/135 (42%), Gaps = 1/135 (0%)
 Frame = +3

Query: 15  VAEMSSVLRGNAHIEGLFRKAGSQARQKDIKKLLDAGGCVS-EGHHPIDVASVLKLYLRC 191
           + E   V+  +   EGLFRK+ S+     + +L D G  V  E   PI   S++K   R 
Sbjct: 182 LVEGMQVVSKSLQTEGLFRKSCSRKHLDIVIELYDNGCMVDLEAFGPIAACSLIKHLFRS 241

Query: 192 LPEPLISAEVQELLLRCRLTAGDDAIKPIXXXXXXXXXXXXXXXXYIMELLKYIATKHRE 371
           LP PL SAE    L     +  D A+                    I  LL  I    +E
Sbjct: 242 LPSPLFSAEFLNGLTDHMDSGIDYAVSLQKLIDASMDKNSQKLARLIFSLLYQITQHEQE 301

Query: 372 NLMDSSNLAIVMAPS 416
           N+M++ NLA+ + PS
Sbjct: 302 NMMNAQNLALCIGPS 316


>SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1150

 Score = 50.8 bits (116), Expect = 1e-07
 Identities = 42/181 (23%), Positives = 86/181 (47%), Gaps = 8/181 (4%)
 Frame = +3

Query: 24   MSSVLRGNAHIEGLFRKAGSQARQKDIKKLLDAG--GCVSEGHHPIDVASVLKLYLRCLP 197
            ++++ R +  + G+FRK G+  R K++  +LD        E   PI +A++LK +LR LP
Sbjct: 869  LAAMKRKDMSVVGVFRKNGNIRRLKELSDMLDVSPDSIDYEQETPIQLAALLKKFLRELP 928

Query: 198  EPLISAEVQELLL-RCRLTAGDDAIKPIXXXXXXXXXXXXXXXXYIMELLKYIAT-KHRE 371
            +PL++ ++  L +   +L + ++ ++ +                 I   L ++A+  H +
Sbjct: 929  DPLLTFKLFGLFITSSKLESEEERMRVLHLTICLLPKGHRDTMEVIFGFLYWVASFSHID 988

Query: 372  ----NLMDSSNLAIVMAPSIMPLPAAASAQRLEHHVALIKLFIENSQHIGLLTEDLMMQL 539
                + MD  NLA V+ P+I+   +          +  + L IEN +    +  ++ + L
Sbjct: 989  DEVGSKMDIHNLATVITPNILYSKSNDPVDESFLAIEAVHLLIENFEKFCEVPREISLLL 1048

Query: 540  D 542
            D
Sbjct: 1049 D 1049


>SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 969

 Score = 49.2 bits (112), Expect = 4e-07
 Identities = 37/143 (25%), Positives = 69/143 (48%), Gaps = 4/143 (2%)
 Frame = +3

Query: 6    RMIVAEMSSVLRGNAHIEGLFRKAGSQARQKDIKKLLDAGGCVSEGHHPIDV---ASVLK 176
            ++I   +S V      +EG++R +GS ++ + +    + G    E H   D+    SVLK
Sbjct: 795  QVIAMCVSCVDAHGLEVEGIYRISGSASQVRVLVDEFENGSIRME-HLTSDLFACTSVLK 853

Query: 177  LYLRCLPEPLI-SAEVQELLLRCRLTAGDDAIKPIXXXXXXXXXXXXXXXXYIMELLKYI 353
             YL  LPEP+I   + +ELL   ++   ++ I+ +                +++  L  +
Sbjct: 854  TYLHRLPEPVIPGTQYEELLEAEKIEKEEEKIERVVEVMKTLHPAHLSVFRFLIAHLGRV 913

Query: 354  ATKHRENLMDSSNLAIVMAPSIM 422
                 +NLM+S N++ V AP++M
Sbjct: 914  CKHAEKNLMNSKNVSTVFAPTLM 936


>SPBC28E12.03 |rga4||GTPase activating protein
            Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 48.8 bits (111), Expect = 5e-07
 Identities = 38/143 (26%), Positives = 62/143 (43%), Gaps = 2/143 (1%)
 Frame = +3

Query: 9    MIVAEMSSVLRGNAHIEGLFRKAGSQARQKDIKKLLDAGGCVSEGHHPID-VASVLKLYL 185
            +IV+ ++ +       EGL+RK+G+ ++ K I  LL     V +    I  V SV K YL
Sbjct: 763  LIVSCINFIESYGMDFEGLYRKSGATSQMKKIVALLRNEDTVLDPSEDISAVTSVFKQYL 822

Query: 186  RCLPEPLISAEVQ-ELLLRCRLTAGDDAIKPIXXXXXXXXXXXXXXXXYIMELLKYIATK 362
            R LP P+I+ +     +      +  D +                    I+  L  +A  
Sbjct: 823  RNLPNPIITYDQYFPFITAANCASFQDKLDGFIMVIKSLPPAHAEILQLIIRHLARVAAY 882

Query: 363  HRENLMDSSNLAIVMAPSIMPLP 431
               N M S NLA+V +P+++  P
Sbjct: 883  SHANRMTSKNLAVVFSPTLIRDP 905


>SPBC17F3.01c |rga5|SPBC557.01|GTPase activating protein
           Rga5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 361

 Score = 46.0 bits (104), Expect = 4e-06
 Identities = 36/149 (24%), Positives = 64/149 (42%), Gaps = 9/149 (6%)
 Frame = +3

Query: 12  IVAEMSSVLRGNA-HIEGLFRKAGSQARQKDIKKLLDAGGCVS-----EGHHPIDVASVL 173
           +VA+    L+ NA  ++G+FR  GS  R + ++K    G         EG+   D A+V 
Sbjct: 70  VVAKCGFFLKQNATQVKGIFRVNGSSKRIQILQKAFSTGPDYGRSFDWEGYTVHDAANVF 129

Query: 174 KLYLRCLPEPLISAEVQELL---LRCRLTAGDDAIKPIXXXXXXXXXXXXXXXXYIMELL 344
           + ++  +PE +I  E  E     +       ++ ++                  Y+++LL
Sbjct: 130 RRFINLMPEHVIPLEYYERFREPMTIPNLTDNERVEMYRRRIDELPIPNRQLLLYLLDLL 189

Query: 345 KYIATKHRENLMDSSNLAIVMAPSIMPLP 431
              A    +NLM + NLA +  P I+  P
Sbjct: 190 SVFAMNSSKNLMTADNLAAIFQPGILSHP 218


>SPAC26A3.09c |rga2||GTPase activating protein
            Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 33.9 bits (74), Expect = 0.016
 Identities = 31/127 (24%), Positives = 56/127 (44%), Gaps = 6/127 (4%)
 Frame = +3

Query: 57   EGLFRKAGSQARQKDIKKLLDAGG----CVSEGHHPIDV-ASVLKLYLRCLPEPLISAEV 221
            EG++R +GS +  K +K+  + G       S+    + V A +LKLYLR LP  L+   +
Sbjct: 1102 EGIYRLSGSASTIKHLKEQFNEGVDYDLLSSDEEFDVHVIAGLLKLYLRNLPTNLLDTSM 1161

Query: 222  QELL-LRCRLTAGDDAIKPIXXXXXXXXXXXXXXXXYIMELLKYIATKHRENLMDSSNLA 398
             +L  L   +     A+  +                 ++  L+ I    + N M+  N+ 
Sbjct: 1162 HKLFELLPNVPNDSAALGELCDVISKLPPENFALLDSLLHHLRRIIAFEKVNKMNIRNVC 1221

Query: 399  IVMAPSI 419
            IV +P++
Sbjct: 1222 IVFSPTL 1228


>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 779

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +3

Query: 150 PIDVASVLKLYLRCLPEPLISAEVQELLL 236
           P+D +S+++ YL   P+PL   E++ L +
Sbjct: 434 PLDHSSIIQRYLNAHPDPLSPEELEPLAI 462


>SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 693

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = +3

Query: 330 IMELLKYIATKHRENLMDSSNLAIVMAPSIMPLPAAASAQRLEHHVALIKLFIEN 494
           I + L+ + T+  +NL D S+    +A S   LPA      L  +V  +K+ +EN
Sbjct: 441 IFQNLEQLGTRVIKNLTDQSSKRKEVANS---LPAGEDVYELSRYVPTLKVVLEN 492


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 17/52 (32%), Positives = 28/52 (53%)
 Frame = -1

Query: 265 ASSPAVSLHRRSNSCTSALISGSGKHLR*SFSTLATSIG*CPSETQPPASSN 110
           A+S ++S    SNS TS+ ++ S  +   S +  ++SI    S + P  SSN
Sbjct: 208 ATSSSLSSTAASNSATSSSLASSSLNSTTSATATSSSISSTVSSSTPLTSSN 259


>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
           Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 17/41 (41%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = +2

Query: 356 DET*-RKLDGFIKSSYCNGTQYHASSSSSFSTKIGASCCTY 475
           DET  RKL   I S Y   T  HA+    FS +   S  TY
Sbjct: 690 DETLDRKLANHIVSMYMEDTPEHATDMEVFSVEFLTSYITY 730


>SPBC30D10.10c |tor1||phosphatidylinositol kinase
            Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 14/54 (25%), Positives = 26/54 (48%)
 Frame = +3

Query: 336  ELLKYIATKHRENLMDSSNLAIVMAPSIMPLPAAASAQRLEHHVALIKLFIENS 497
            E   Y+++KH   + DSS L  ++A S +     +   R  H +   K  +++S
Sbjct: 1570 EFTSYLSSKHGYKMGDSSKLVDILASSSVSSEERSFLARCFHKLGKWKKSLQDS 1623


>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +2

Query: 338 VAKVHSDET*RKLDGFIKSSYCNGTQYHASSSSSFSTKIG 457
           VA+    +T R+++G + SS  NG +  +    + S KIG
Sbjct: 396 VAESPRTDTPREINGLVDSSVTNGNEKFSVEIMNDSNKIG 435


>SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 411

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 14/52 (26%), Positives = 25/52 (48%)
 Frame = +3

Query: 90  RQKDIKKLLDAGGCVSEGHHPIDVASVLKLYLRCLPEPLISAEVQELLLRCR 245
           R  ++   L +   ++E + P     + KL L+CLP P    + +EL  + R
Sbjct: 118 RVSNVDDHLSSNPLMAEEYAPEIFEYIRKLDLKCLPNPKYMDQQKELTWKMR 169


>SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 505

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = -3

Query: 248 ESTSKEQFLYFSTDKWFW 195
           EST K + LYF  DK FW
Sbjct: 125 ESTPKAKPLYFLLDKRFW 142


>SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 825

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +3

Query: 348 YIATKHRENLMDSSNLAIVMAPSIMPLPAAASAQRLEHH 464
           ++AT  R   M S N   +M  S  P PA  S +  EHH
Sbjct: 594 FLATVAR--CMKSENTINLMVSSKNPQPAYLSVEEAEHH 630


>SPCC330.05c |ura4||orotidine 5'-phosphate decarboxylase Ura4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 264

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 236 KEQFLYFSTDKWFW*TSQVKLQYTSHIYRM 147
           K +FL F   K+    + VKLQY S +Y++
Sbjct: 85  KHRFLIFEDRKFADIGNTVKLQYASGVYKI 114


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,146,457
Number of Sequences: 5004
Number of extensions: 39718
Number of successful extensions: 136
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)