Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_N08
(544 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0413 + 17854787-17854847,17855362-17855606,17856127-178561... 52 3e-07
07_03_0032 - 12651989-12652636,12652726-12652956,12653515-126536... 39 0.002
12_01_0356 - 2707820-2708395,2708475-2708705,2709071-2709190,270... 38 0.007
12_02_0615 + 21242819-21243201,21244510-21244630,21244728-212448... 36 0.016
11_01_0332 + 2483743-2484131,2486062-2486182,2486307-2486426,248... 33 0.15
04_04_0883 + 29079315-29079715,29080918-29081038,29081127-290812... 33 0.19
02_05_0309 + 27762613-27763070,27763940-27764060,27764168-277642... 32 0.34
08_02_1091 + 24256025-24256190,24256806-24257978,24258066-242587... 28 4.2
08_02_1226 + 25394106-25394168,25394243-25394396,25394548-253946... 28 5.5
06_01_0967 + 7466702-7466828,7466862-7467022,7467363-7467401 28 5.5
01_06_1223 + 35502310-35502753,35503461-35503677,35504023-355041... 27 7.3
07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,177... 27 9.7
>07_03_0413 +
17854787-17854847,17855362-17855606,17856127-17856189,
17856276-17856294,17856547-17856645,17856725-17856802,
17856891-17857135,17857796-17857952,17858161-17858303
Length = 369
Score = 52.0 bits (119), Expect = 3e-07
Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 2/124 (1%)
Frame = +3
Query: 57 EGLFRKAGSQARQKDIKKLL--DAGGCVSEGHHPIDVASVLKLYLRCLPEPLISAEVQEL 230
E LF+ G + + + L D+G +G +PIDVA+++K YL +PEPL + + +
Sbjct: 167 EYLFKSEGEKKVLQQLVSLYNEDSGAPFPDGVNPIDVAALIKCYLASIPEPLTTFSLYDE 226
Query: 231 LLRCRLTAGDDAIKPIXXXXXXXXXXXXXXXXYIMELLKYIATKHRENLMDSSNLAIVMA 410
L R++ D + ++ LL ++ K N MDS +LA+ A
Sbjct: 227 LRDARVSIAD-----LRNILKKLPNVNYMTLEFVTALLLRVSRKSSLNKMDSRSLAVEFA 281
Query: 411 PSIM 422
P IM
Sbjct: 282 PLIM 285
>07_03_0032 -
12651989-12652636,12652726-12652956,12653515-12653634,
12653768-12653891,12654023-12654366
Length = 488
Score = 39.1 bits (87), Expect = 0.002
Identities = 30/142 (21%), Positives = 70/142 (49%)
Frame = +3
Query: 57 EGLFRKAGSQARQKDIKKLLDAGGCVSEGHHPIDVASVLKLYLRCLPEPLISAEVQELLL 236
EG+FR ++++++++ L+ G V + +AS++K + R LPE ++ + E +L
Sbjct: 158 EGIFRITPENSQEENVREQLNRG-LVPDDIDVHCLASLIKAWFRELPEGVLDSLSPEQVL 216
Query: 237 RCRLTAGDDAIKPIXXXXXXXXXXXXXXXXYIMELLKYIATKHRENLMDSSNLAIVMAPS 416
C ++ ++ + +++E + + + N M++ N+A+V AP+
Sbjct: 217 HC--NTEEECVELV----RLLPPTQAALLNWVVEFMADVVEEEESNKMNARNVAMVFAPN 270
Query: 417 IMPLPAAASAQRLEHHVALIKL 482
+ + +A L H V ++ L
Sbjct: 271 MTQMSDPLTA--LMHAVQVMNL 290
>12_01_0356 -
2707820-2708395,2708475-2708705,2709071-2709190,
2709281-2709401,2711588-2712027
Length = 495
Score = 37.5 bits (83), Expect = 0.007
Identities = 27/127 (21%), Positives = 62/127 (48%)
Frame = +3
Query: 39 RGNAHIEGLFRKAGSQARQKDIKKLLDAGGCVSEGHHPIDVASVLKLYLRCLPEPLISAE 218
+G EG+FR ++++ ++ L+ GG V EG +A ++K + R LP ++ +
Sbjct: 183 QGGLRAEGIFRINAENSQEELVRDQLN-GGIVPEGIDVHCLAGLIKAWFRELPSGVLDSI 241
Query: 219 VQELLLRCRLTAGDDAIKPIXXXXXXXXXXXXXXXXYIMELLKYIATKHRENLMDSSNLA 398
E +++C+ + +D + + + L+ + + + N M++ N+A
Sbjct: 242 PPEQVMQCQ--SEEDCAR----VAKCLPPTEAALLDWAVNLMADVVQEEQINKMNARNIA 295
Query: 399 IVMAPSI 419
+V AP++
Sbjct: 296 MVFAPNM 302
>12_02_0615 +
21242819-21243201,21244510-21244630,21244728-21244847,
21245015-21245245,21245365-21245862
Length = 450
Score = 36.3 bits (80), Expect = 0.016
Identities = 29/127 (22%), Positives = 59/127 (46%)
Frame = +3
Query: 39 RGNAHIEGLFRKAGSQARQKDIKKLLDAGGCVSEGHHPIDVASVLKLYLRCLPEPLISAE 218
+G EG+FR +++ ++ L+ G V E +AS++K + R LPE ++ +
Sbjct: 164 QGGLKAEGIFRINPENDQEEHVRDQLNKG-VVPEDIDVHCLASLIKAWFRELPEGVLDSL 222
Query: 219 VQELLLRCRLTAGDDAIKPIXXXXXXXXXXXXXXXXYIMELLKYIATKHRENLMDSSNLA 398
E +L+C + G+ + +EL+ + + N M++ N+A
Sbjct: 223 SPEQVLQCN-SEGE-----FLELVTLLRPTQAALLNWAVELMADVVEEEELNKMNARNIA 276
Query: 399 IVMAPSI 419
+V AP++
Sbjct: 277 MVFAPNM 283
>11_01_0332 +
2483743-2484131,2486062-2486182,2486307-2486426,
2486897-2487127,2487205-2487783
Length = 479
Score = 33.1 bits (72), Expect = 0.15
Identities = 24/127 (18%), Positives = 62/127 (48%)
Frame = +3
Query: 39 RGNAHIEGLFRKAGSQARQKDIKKLLDAGGCVSEGHHPIDVASVLKLYLRCLPEPLISAE 218
+G EG+FR ++++ ++ L++G V +G ++ ++K + R LP ++ +
Sbjct: 166 QGGLRAEGIFRINAENSQEEFVRDQLNSG-IVPDGIDIHCLSGLIKAWFRELPSGVLDSI 224
Query: 219 VQELLLRCRLTAGDDAIKPIXXXXXXXXXXXXXXXXYIMELLKYIATKHRENLMDSSNLA 398
E +++C+ + +D + + + L+ + + + N M++ N+A
Sbjct: 225 PPEQVMQCQ--SEEDCAR----VAKCLPPAEAALLEWAVNLMADVVQEEQINKMNARNIA 278
Query: 399 IVMAPSI 419
+V AP++
Sbjct: 279 MVFAPNM 285
>04_04_0883 +
29079315-29079715,29080918-29081038,29081127-29081246,
29081646-29081876,29081951-29082517
Length = 479
Score = 32.7 bits (71), Expect = 0.19
Identities = 29/139 (20%), Positives = 62/139 (44%)
Frame = +3
Query: 3 TRMIVAEMSSVLRGNAHIEGLFRKAGSQARQKDIKKLLDAGGCVSEGHHPIDVASVLKLY 182
T +++ + R IEG+FR +++ ++K L++ G V + +A ++K +
Sbjct: 158 TILLMMQRKLYEREGLKIEGIFRINAENSQEICVRKQLNS-GVVPDEVDLHCLAGLIKAW 216
Query: 183 LRCLPEPLISAEVQELLLRCRLTAGDDAIKPIXXXXXXXXXXXXXXXXYIMELLKYIATK 362
R LP ++ + E ++ C T D A+ + + L+ +
Sbjct: 217 FRELPTGVLDSLTPEQVMHCN-TEEDCAL-----LASMLPPVEAALLDWAINLMADVVEH 270
Query: 363 HRENLMDSSNLAIVMAPSI 419
N M++ N+A+V AP++
Sbjct: 271 ENYNKMNARNIAMVFAPNM 289
>02_05_0309 +
27762613-27763070,27763940-27764060,27764168-27764287,
27764633-27764863,27764964-27765503
Length = 489
Score = 31.9 bits (69), Expect = 0.34
Identities = 25/126 (19%), Positives = 55/126 (43%)
Frame = +3
Query: 42 GNAHIEGLFRKAGSQARQKDIKKLLDAGGCVSEGHHPIDVASVLKLYLRCLPEPLISAEV 221
G EG+FR +++ +++ L+ G V +G + ++K + R LP ++ +
Sbjct: 190 GGLQAEGIFRINADNSQELHVREQLNMG-VVPDGVDMHCLTGLIKAWFRELPSGVLDSLT 248
Query: 222 QELLLRCRLTAGDDAIKPIXXXXXXXXXXXXXXXXYIMELLKYIATKHRENLMDSSNLAI 401
E ++ C T + A+ + + L+ + N M++ N+A+
Sbjct: 249 PEQVMHCN-TEEECAL-----LASTLPPVEAALLDWAINLMADVVEHENYNKMNARNIAM 302
Query: 402 VMAPSI 419
V AP++
Sbjct: 303 VFAPNM 308
>08_02_1091 +
24256025-24256190,24256806-24257978,24258066-24258733,
24258994-24260065,24260241-24260563,24260647-24260835,
24261400-24261506,24262103-24262163,24262617-24262634
Length = 1258
Score = 28.3 bits (60), Expect = 4.2
Identities = 23/86 (26%), Positives = 36/86 (41%)
Frame = +3
Query: 21 EMSSVLRGNAHIEGLFRKAGSQARQKDIKKLLDAGGCVSEGHHPIDVASVLKLYLRCLPE 200
+MSS+ + E A SQ Q+ K + GGC G H ++ A + C+ E
Sbjct: 60 KMSSIDLAHMRNENSLHHAQSQTYQRVKPKTHEFGGCKPGGLHIVNYAGEIDQSQICVSE 119
Query: 201 PLISAEVQELLLRCRLTAGDDAIKPI 278
+ VQE + L G + P+
Sbjct: 120 SV----VQEFNIAHSLNEGLPSTSPV 141
>08_02_1226 +
25394106-25394168,25394243-25394396,25394548-25394664,
25395541-25395607,25395701-25395828,25396327-25396460,
25396552-25396650,25396780-25396902
Length = 294
Score = 27.9 bits (59), Expect = 5.5
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +2
Query: 59 RFISQGGITGSPERYKEVTRCWWL 130
R +GG+ G PE+ +V WW+
Sbjct: 205 RQCKEGGLNGRPEKLADVCYSWWV 228
>06_01_0967 + 7466702-7466828,7466862-7467022,7467363-7467401
Length = 108
Score = 27.9 bits (59), Expect = 5.5
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +3
Query: 129 CVSEGHHPIDVASVLKLYLRCLPEPL 206
C S GHHP+D L+ +L LPE L
Sbjct: 24 CASIGHHPVD----LQFFLNDLPEQL 45
>01_06_1223 +
35502310-35502753,35503461-35503677,35504023-35504183,
35504262-35504327,35504474-35504637,35504914-35505028,
35506050-35506202
Length = 439
Score = 27.5 bits (58), Expect = 7.3
Identities = 18/60 (30%), Positives = 27/60 (45%)
Frame = +3
Query: 78 GSQARQKDIKKLLDAGGCVSEGHHPIDVASVLKLYLRCLPEPLISAEVQELLLRCRLTAG 257
G++A I+ + D + E HH ++ L L L P IS E + LL C + G
Sbjct: 179 GAEASTFGIRGVTDHAIFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKRRLLHCVVVGG 238
>07_01_0242 +
1775704-1776797,1776839-1777759,1778312-1778412,
1778770-1778900,1779530-1779788,1779823-1780098,
1780100-1781352
Length = 1344
Score = 27.1 bits (57), Expect = 9.7
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = +3
Query: 405 MAPSIMPLPAAASAQRLEHHVALIKLFIENSQHIGLLTEDLMMQLD 542
+ P+ + PAA A +L+H IK +++ ++ G+L ED +D
Sbjct: 748 VTPTNLADPAARVAFKLKHTRTTIKGWMQANRKRGILCEDCKFTID 793
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,033,607
Number of Sequences: 37544
Number of extensions: 269434
Number of successful extensions: 788
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 786
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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