Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_N07
         (531 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    27   1.3  
SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyc...    26   3.0  
SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr...    22   3.1  
SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2 |Schizosacc...    26   4.0  
SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|ch...    25   5.3  
SPCC18B5.04 |rsm18||mitochondrial ribosomal protein subunit S18|...    25   9.3  
SPBC146.10 |mug57||meiotically upregulated gene Mug57|Schizosacc...    25   9.3  
SPAC25B8.10 |||trans-aconitate 3-methyltransferase |Schizosaccha...    25   9.3  

>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
           Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 174 AYMTNVVEQW*RNTKWIQNRILEYTVE 254
           A++T+  E W  N  W   +IL+Y+ E
Sbjct: 23  AFLTDENEPWNLNRNWTAQKILDYSAE 49


>SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 381

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 11/51 (21%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
 Frame = -1

Query: 357 FSPKCWSKQHPSYKIIPD-ITSRILARSSLI--EFEKIPRYTPISYSGSIW 214
           F P   +  HP + I+PD + + +L R +++  ++E++ ++  +      W
Sbjct: 106 FHPVTLTSDHPLWSILPDEVRNSLLERKNVMAFDYEQVKKFVSVDQPTFQW 156


>SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 667

 Score = 22.2 bits (45), Expect(2) = 3.1
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -1

Query: 240 PISYSGSIWYSF 205
           P  ++GSIWY F
Sbjct: 244 PSLFTGSIWYEF 255



 Score = 22.2 bits (45), Expect(2) = 3.1
 Identities = 8/28 (28%), Positives = 13/28 (46%)
 Frame = -1

Query: 216 WYSFTTAPRHWSCRHSCPAKPFQSYCGC 133
           + S+ +  R WS + + P       CGC
Sbjct: 277 YLSYVSLDRRWSYKDTLPFIFISILCGC 304


>SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 849

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -1

Query: 384 LQQYSISIPFSP-KCWSKQHPSYKIIPDITSRILARSSLIEF 262
           L+ Y + I  SP K + + HP+Y     I  RIL RS  ++F
Sbjct: 721 LKHYDVEI--SPAKSFLEVHPNYLNKGSIVRRILKRSGSVDF 760


>SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 404

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = -2

Query: 287 WLVLALSNSRRFHGILQYPILDPFGIPSPLLHDIGHV-GTVVLQSRSSRIVAVDYITDIS 111
           W V+A  NS  FH I +   L     P  +LH I H+     L+ R   ++ V  I  +S
Sbjct: 202 WSVVAWRNSLLFHSIDKITSLFIHFFPPLVLHTIVHLTNKSYLKDRFPAVLKVKKIDLLS 261

Query: 110 IV 105
            V
Sbjct: 262 SV 263


>SPCC18B5.04 |rsm18||mitochondrial ribosomal protein subunit
           S18|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 166

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = +3

Query: 87  RIFKPK-NDGDI-CDIVNSHNTTGTALQDN 170
           RIF P  N G I C+++ S+N+T     DN
Sbjct: 5   RIFSPAPNRGFILCNLIQSNNSTRRGFSDN 34


>SPBC146.10 |mug57||meiotically upregulated gene
           Mug57|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 189

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 103 FGLNILRFLPATTFVNVFLEAGTIPL 26
           F LNI RFL  T+F++  L     P+
Sbjct: 5   FCLNIFRFLYTTSFISAVLSFNQRPI 30


>SPAC25B8.10 |||trans-aconitate 3-methyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 256

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -2

Query: 167 VLQSRSSRIVAVDYITDISIVLRFKYPQI 81
           ++ S    I+AVD   ++  VLR K+P +
Sbjct: 58  IIASHPKEIIAVDVYPEMLDVLRKKFPNV 86


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,463,806
Number of Sequences: 5004
Number of extensions: 54368
Number of successful extensions: 146
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)