Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_N07
(531 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1017 - 8036894-8036907,8037478-8038690 33 0.14
01_01_1016 - 8031876-8032008,8032129-8032253,8032659-8032728,803... 33 0.14
08_01_0644 - 5570123-5570453,5571078-5571242,5571899-5572311 30 1.3
04_03_0531 + 16817676-16818299 29 2.3
01_06_1239 + 35652053-35654050 29 2.3
03_05_0487 + 24838620-24838967,24840526-24840747,24840819-248411... 29 3.1
02_04_0291 + 21637700-21638164 28 5.4
12_02_1152 + 26515422-26515460,26516317-26516454,26518647-265188... 27 7.1
07_01_1013 - 8593690-8595006,8595275-8595928,8595951-8596065,859... 27 7.1
05_03_0034 - 7589272-7589670,7589729-7590007 27 7.1
>01_01_1017 - 8036894-8036907,8037478-8038690
Length = 408
Score = 33.1 bits (72), Expect = 0.14
Identities = 19/48 (39%), Positives = 30/48 (62%), Gaps = 3/48 (6%)
Frame = -2
Query: 200 LLH--DIGHVGTVVLQSRSSRIVAVDYITDISIVLR-FKYPQIPSSYH 66
LLH ++G V + SR+S + AVD +T I + + +K PQ+P+ YH
Sbjct: 334 LLHPKELGVVFFFQITSRNSWMFAVDLVTRIVLECKKYKMPQLPTMYH 381
>01_01_1016 -
8031876-8032008,8032129-8032253,8032659-8032728,
8032815-8034022
Length = 511
Score = 33.1 bits (72), Expect = 0.14
Identities = 19/48 (39%), Positives = 30/48 (62%), Gaps = 3/48 (6%)
Frame = -2
Query: 200 LLH--DIGHVGTVVLQSRSSRIVAVDYITDISIVLR-FKYPQIPSSYH 66
LLH ++G V + SR+S + AVD +T I + + +K PQ+P+ YH
Sbjct: 331 LLHPKELGVVFFFQITSRNSWMFAVDLVTRIVLECKKYKMPQLPTMYH 378
>08_01_0644 - 5570123-5570453,5571078-5571242,5571899-5572311
Length = 302
Score = 29.9 bits (64), Expect = 1.3
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +1
Query: 346 FWTKRNGDTVLLQFISNRASYLWAV 420
FW+K GD +LQF+++ A YL ++
Sbjct: 121 FWSKVGGDDEVLQFLADHAPYLRSI 145
>04_03_0531 + 16817676-16818299
Length = 207
Score = 29.1 bits (62), Expect = 2.3
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +3
Query: 108 DGDICDIVNSHNTTGTALQDNCAYMTNVVEQW 203
D D+ D +S + ++LQ +CA+ ++QW
Sbjct: 149 DDDLDDTASSSSAVSSSLQPSCAFSARHLQQW 180
>01_06_1239 + 35652053-35654050
Length = 665
Score = 29.1 bits (62), Expect = 2.3
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -2
Query: 89 PQIPSSYHLRERLPGSWHHSSQTHIPD 9
P +PSS R P H Q H+PD
Sbjct: 40 PSLPSSQPFHRRKPAEPQHQRQDHVPD 66
>03_05_0487 +
24838620-24838967,24840526-24840747,24840819-24841109,
24841316-24841513,24841641-24841705,24841788-24841874,
24841988-24842108,24842200-24842244,24842321-24842458,
24842571-24842643,24842723-24842799,24842882-24842989,
24843108-24843224,24843524-24843679,24843780-24843881,
24844036-24844161,24844237-24844314,24844390-24844485,
24844592-24844707,24844781-24844850,24844930-24844983,
24845062-24845205,24845297-24845596,24845780-24846202,
24846316-24846429
Length = 1222
Score = 28.7 bits (61), Expect = 3.1
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Frame = +2
Query: 2 HEGQGYGSERNGA---SFQEDVHEGGSWKESEDI*TEERW 112
H G GYG+E GA ED G + E+I E+ W
Sbjct: 21 HHGGGYGAEEYGAVGGEEMEDEEADGDAPDEEEITQEDAW 60
>02_04_0291 + 21637700-21638164
Length = 154
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 7 GSGIWV*EEWCQLPGRRSRRW 69
G G W+ W + PGRR RRW
Sbjct: 131 GGGRWLERRW-KAPGRRIRRW 150
>12_02_1152 +
26515422-26515460,26516317-26516454,26518647-26518809,
26519165-26519213,26519315-26519390,26520348-26520473
Length = 196
Score = 27.5 bits (58), Expect = 7.1
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -3
Query: 343 LVKTTPVLQDYPRHHLQDFG 284
L+ + P LQD+ HHLQ+ G
Sbjct: 43 LMHSAPALQDHHHHHLQESG 62
>07_01_1013 -
8593690-8595006,8595275-8595928,8595951-8596065,
8596560-8596861,8596884-8597369
Length = 957
Score = 27.5 bits (58), Expect = 7.1
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +2
Query: 2 HEGQGYGSERNGASFQEDVHEGG 70
H+G GYG+ NG F + H G
Sbjct: 18 HDGGGYGNGDNGGGFADGSHVSG 40
>05_03_0034 - 7589272-7589670,7589729-7590007
Length = 225
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/18 (66%), Positives = 14/18 (77%), Gaps = 3/18 (16%)
Frame = -3
Query: 262 REDSTVY---SNILFWIH 218
RED+T Y +NILFWIH
Sbjct: 109 REDTTTYLKKANILFWIH 126
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,773,760
Number of Sequences: 37544
Number of extensions: 348651
Number of successful extensions: 783
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 783
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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