Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_N07
         (531 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49909-17|CAD60413.1|  303|Caenorhabditis elegans Hypothetical p...    32   0.29 
Z72503-8|CAJ85752.1|  341|Caenorhabditis elegans Hypothetical pr...    30   0.90 
Z72503-7|CAA96597.1|  424|Caenorhabditis elegans Hypothetical pr...    30   0.90 
AF047662-3|AAC04443.2|  263|Caenorhabditis elegans Hypothetical ...    29   1.6  
AC024805-12|AAK39343.1|  557|Caenorhabditis elegans Hypothetical...    29   1.6  
U41027-2|AAV28335.1|  447|Caenorhabditis elegans Hypothetical pr...    27   6.3  
U41027-1|AAV28336.1|  480|Caenorhabditis elegans Hypothetical pr...    27   6.3  
AC006610-3|AAK85449.1|  264|Caenorhabditis elegans Hypothetical ...    27   6.3  
Z68227-17|CAA92508.2|  348|Caenorhabditis elegans Hypothetical p...    27   8.4  

>Z49909-17|CAD60413.1|  303|Caenorhabditis elegans Hypothetical
           protein C14A4.15 protein.
          Length = 303

 Score = 31.9 bits (69), Expect = 0.29
 Identities = 31/81 (38%), Positives = 43/81 (53%), Gaps = 7/81 (8%)
 Frame = -3

Query: 253 STVYSNILFWIHL----VFLHHCSTTLVM*A--QLSCKAVPVVLWLLTISQISPSFFGLN 92
           STV +N+L +  L    V    C  +L+      LS KA  +VLWLLT+S  + +F   N
Sbjct: 211 STVQTNLLIYACLSTVIVLAMTCFQSLLAFHVFDLSAKAYQIVLWLLTVS--ADAFALSN 268

Query: 91  -ILRFLPATTFVNVFLEAGTI 32
             L F  ++TF + FLEA  I
Sbjct: 269 PWLLFCLSSTFRHKFLEARKI 289


>Z72503-8|CAJ85752.1|  341|Caenorhabditis elegans Hypothetical
           protein C26C6.4b protein.
          Length = 341

 Score = 30.3 bits (65), Expect = 0.90
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = -2

Query: 149 SRIVAVDYITDISIVLRFKYPQIPS 75
           SR+VA+ + T   ++L+ KYP IPS
Sbjct: 63  SRLVAISFDTPSHLILKEKYPNIPS 87


>Z72503-7|CAA96597.1|  424|Caenorhabditis elegans Hypothetical
           protein C26C6.4a protein.
          Length = 424

 Score = 30.3 bits (65), Expect = 0.90
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = -2

Query: 149 SRIVAVDYITDISIVLRFKYPQIPS 75
           SR+VA+ + T   ++L+ KYP IPS
Sbjct: 146 SRLVAISFDTPSHLILKEKYPNIPS 170


>AF047662-3|AAC04443.2|  263|Caenorhabditis elegans Hypothetical
           protein T22B2.5 protein.
          Length = 263

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -3

Query: 265 IREDSTVYSNILFWIHLVFLHHCSTTLV 182
           +R     Y  ++FWI +VF+H C    V
Sbjct: 123 LRSKREKYFRVIFWIFIVFIHLCQAVYV 150


>AC024805-12|AAK39343.1|  557|Caenorhabditis elegans Hypothetical
           protein Y51H7C.12 protein.
          Length = 557

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 19/49 (38%), Positives = 28/49 (57%)
 Frame = -2

Query: 149 SRIVAVDYITDISIVLRFKYPQIPSSYHLRERLPGSWHHSSQTHIPDPR 3
           SR+VA+ +  +   VL+ K+P IP   +L   L G  H  S + +PDPR
Sbjct: 281 SRLVAISFDPNSHSVLKQKHPNIP---NLLFDLTG--HKKSISSLPDPR 324


>U41027-2|AAV28335.1|  447|Caenorhabditis elegans Hypothetical
           protein R08E3.4a protein.
          Length = 447

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
 Frame = -2

Query: 284 LVLALSNSRRFHGI---LQYPILDPFGIPSPLLHDIGHVGTVVLQSR 153
           L++ L+   +F+G    +  P+L+   IP P LH+I  V  +V Q +
Sbjct: 322 LLMCLNQMNQFNGFGENIPRPMLNIPNIPLPALHNIPAVAAIVKQDQ 368


>U41027-1|AAV28336.1|  480|Caenorhabditis elegans Hypothetical
           protein R08E3.4b protein.
          Length = 480

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
 Frame = -2

Query: 284 LVLALSNSRRFHGI---LQYPILDPFGIPSPLLHDIGHVGTVVLQSR 153
           L++ L+   +F+G    +  P+L+   IP P LH+I  V  +V Q +
Sbjct: 322 LLMCLNQMNQFNGFGENIPRPMLNIPNIPLPALHNIPAVAAIVKQDQ 368


>AC006610-3|AAK85449.1|  264|Caenorhabditis elegans Hypothetical
           protein C30F12.3 protein.
          Length = 264

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +3

Query: 78  RNLRIFKPKNDGDICDIVNSHNTTGTALQDNCAYMTNVVEQW 203
           R  RIF P ++  +C   ++H+ TG  +      +T V E W
Sbjct: 36  RGDRIFNPNHEKYLCCCGHAHSLTGMKIVAGMLCVTVVFELW 77


>Z68227-17|CAA92508.2|  348|Caenorhabditis elegans Hypothetical
           protein F49C12.3 protein.
          Length = 348

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -2

Query: 149 SRIVAVDYITDISIVLRFKYPQIPS 75
           SRIVA+ +  D  + L  KYP IP+
Sbjct: 71  SRIVAIAFDKDAHLKLHEKYPNIPN 95


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,422,360
Number of Sequences: 27780
Number of extensions: 298312
Number of successful extensions: 732
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1049512662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)