Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_N06
         (579 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein L25|S...    29   0.65 
SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomy...    28   0.86 
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    28   1.1  
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual    27   2.0  
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    27   2.6  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   3.5  
SPCC290.02 |rpc34||DNA-directed RNA polymerase III complex subun...    26   3.5  
SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr 2...    26   4.6  
SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyce...    25   6.1  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    25   6.1  
SPBC17D11.06 |spp2|pri2|DNA primase large subunit Spp2 |Schizosa...    25   6.1  
SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificit...    25   8.0  
SPBC19C7.08c |||leucine carboxyl methyltransferase|Schizosacchar...    25   8.0  

>SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score = 28.7 bits (61), Expect = 0.65
 Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
 Frame = -1

Query: 486 SGTLDRNPTTGALYFRPKGRKQSLPNTSTITKSNITVE-LNKASTGGSLATVSHACTHSF 310
           + T  R P T  L  +PK  ++S+P+ S + +  I V  +N  S    +   +    H  
Sbjct: 27  TSTTFRRPKTLELARKPKYARKSVPHASRLDEYKIIVNPINSESAMKKIEDDNTLVFHVH 86

Query: 309 IICSKFRIKSGL 274
           +  +KF IK+ +
Sbjct: 87  LKANKFTIKNAV 98


>SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 581

 Score = 28.3 bits (60), Expect = 0.86
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = -1

Query: 465 PTTGALYFRPK-GRKQSLPNTSTITKSNITVELNKASTGGSLATVSHACTHSFIIC 301
           P  G  + R + G   +LPN   +  S   V++NK     SL  +    TH ++ C
Sbjct: 490 PENGVEWQRLRSGDYSNLPNLKDLLLSKEKVQINKVRCAESLQCLLQRMTHPYVDC 545


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1647

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -1

Query: 495 IQGSGTLDRNPTTGALYFRPKGRKQSLPNTSTITK 391
           I+ S  LDR P   ALYF    R+Q L    ++T+
Sbjct: 105 IEASQNLDRTPVQAALYFFFLAREQLLECLESLTR 139


>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 973

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -1

Query: 486 SGTLDRNPTTGALYFRPKGRKQSLPNTSTITKSNITV 376
           S  L  NPTT A+Y        + P ++ IT SN +V
Sbjct: 151 STNLPTNPTTTAIYSTSGSSNITTPYSNRITNSNTSV 187


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 14/52 (26%), Positives = 28/52 (53%)
 Frame = -1

Query: 498 LIQGSGTLDRNPTTGALYFRPKGRKQSLPNTSTITKSNITVELNKASTGGSL 343
           L  G  TL  +PT+ + +     R+ S+  +++ + +++ V    +ST GSL
Sbjct: 410 LNSGVSTLLASPTSSSTFVTSLLRRSSIDGSASSSSASLAVPTVSSSTTGSL 461


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 57   RTLPVFSPCSPPTLKVTMPCTVGSSKPLPPDITT 158
            + LPV +P +P TL      TV  SKP+  +  T
Sbjct: 1177 KELPVPAPAAPQTLNPPSVSTVQQSKPIESNTHT 1210


>SPCC290.02 |rpc34||DNA-directed RNA polymerase III complex subunit
           Rpc34|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 301

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 20/82 (24%), Positives = 38/82 (46%)
 Frame = +2

Query: 83  LPTNTKSHYAMYGRLVEALAARHHHITVISHFPMKNPLPYIDQISLAGTIPEITNNLTRP 262
           L   T  H ++  R +++L +++    V S   +KNP   I  +       E+T      
Sbjct: 107 LTLRTNLHVSVVDRCLKSLESKN---LVKSIKSVKNPTRKIYMLYDLVPSTELTGGPWFT 163

Query: 263 QQSIKPDFIRNLEQIMNECVHA 328
            Q +  +FI NL++++   VH+
Sbjct: 164 DQELDVEFIENLKKVIYRYVHS 185


>SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 411

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = +3

Query: 423 VSCLWVENIK-HQLSDSYRAYRCPGLTIRLVTQKLLPTYRHT*W 551
           V C  + ++  H L  S   ++ P L  + V Q+ L   RHT W
Sbjct: 292 VDCQHLHSLDTHSLDISTHTFKLPPLMSKEVFQQFLQWVRHTLW 335


>SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 563

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -1

Query: 288 IKSGLIDCCGRVKLFVISGI 229
           +K G+  CCGR+K   +SG+
Sbjct: 417 LKQGIGPCCGRLKHLNLSGL 436


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +3

Query: 66  PVFSPCSPPTLKVTMPCTVGSSKPLPPDITTSP 164
           P   P  PP+   ++P    ++ PLPP    +P
Sbjct: 425 PSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAP 457


>SPBC17D11.06 |spp2|pri2|DNA primase large subunit Spp2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 459

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 125 LVEALAARHHHITVISHFPMKNP 193
           +VEA+ ARH+HI     F + +P
Sbjct: 415 VVEAVKARHYHIACTRVFELTHP 437


>SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificity
           factor complex subunit Ysh1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -1

Query: 402 TITKSNITVELNKASTGGSLATVSHACTH 316
           TI  S IT+ L   S+  S+   SH C H
Sbjct: 601 TIADSVITILLGIESSPASVKLTSHKCNH 629


>SPBC19C7.08c |||leucine carboxyl
           methyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 681

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = -3

Query: 409 YLYDN*IKHYC*IE*SFYRWQSCNSFTRMYALVH 308
           +L D+ +KH C +   F  W+    F + Y++ H
Sbjct: 284 FLMDSKLKHLCEMVEPFDEWEEFYFFLQHYSIQH 317


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,565,976
Number of Sequences: 5004
Number of extensions: 56112
Number of successful extensions: 167
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)