Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_N06
         (579 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0458 + 14280953-14281866,14281964-14282912                       32   0.29 
08_02_0600 - 19166283-19166851,19166988-19168839,19169347-191694...    31   0.66 
09_06_0153 - 21243108-21245660                                         28   6.2  
02_05_0482 + 29382696-29383251,29383376-29383692                       28   6.2  
01_01_0189 - 1640581-1640832,1640936-1641132,1641243-1641608,164...    28   6.2  
12_02_0480 + 19533214-19534045,19534178-19534222,19535217-19535362     27   8.2  
06_01_0036 + 364316-365758                                             27   8.2  
04_01_0418 - 5531652-5531827,5535111-5535195,5535250-5535402,553...    27   8.2  
02_03_0246 - 16807619-16808145,16808208-16808868                       27   8.2  

>05_03_0458 + 14280953-14281866,14281964-14282912
          Length = 620

 Score = 32.3 bits (70), Expect = 0.29
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +3

Query: 63  LPVFSPCSPPTLKVTMPCTVGSSKPLPPDITTSP 164
           LP   P  PP    T+ C+   + P PP  TTSP
Sbjct: 68  LPPLQPTPPPLPPTTLSCSSHPTPPPPPSPTTSP 101


>08_02_0600 -
           19166283-19166851,19166988-19168839,19169347-19169415,
           19171797-19171844,19173500-19173622
          Length = 886

 Score = 31.1 bits (67), Expect = 0.66
 Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 3/85 (3%)
 Frame = +2

Query: 26  VCLMLWCAAEAYAARILAVLPTNTKSHYAMYGRLVEALAAR---HHHITVISHFPMKNPL 196
           V L +W      +A + AVL    ++   MY  +  ALAAR    +    +S F + N  
Sbjct: 600 VVLPMWPEGVPESATVQAVLDWQRRTMEMMYKDVAAALAARGSTQNPREYLSFFCLGNRE 659

Query: 197 PYIDQISLAGTIPEITNNLTRPQQS 271
           PY+         PE+ ++  R QQ+
Sbjct: 660 PYVPGEHAPPERPELDSDYMRAQQA 684


>09_06_0153 - 21243108-21245660
          Length = 850

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = -1

Query: 420 SLPNTSTITKSNITVELNKASTGGSLATVSHACTHSFIIC 301
           +L NT+++  S +  EL+  +TGG    VS A   + IIC
Sbjct: 153 TLANTASVDVSRMAAELDLTATGGGRLAVSTAIATN-IIC 191


>02_05_0482 + 29382696-29383251,29383376-29383692
          Length = 290

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 17/61 (27%), Positives = 26/61 (42%)
 Frame = -1

Query: 459 TGALYFRPKGRKQSLPNTSTITKSNITVELNKASTGGSLATVSHACTHSFIICSKFRIKS 280
           TG ++ R +GR      T T +   + VE+   STG  +  +S       + C K  I  
Sbjct: 126 TGTIFGRRRGRVHVALQTDTRSPPVLLVEMAAYSTGALVREMSSGLVRLALECEKQPINP 185

Query: 279 G 277
           G
Sbjct: 186 G 186


>01_01_0189 -
           1640581-1640832,1640936-1641132,1641243-1641608,
           1641826-1642224,1642313-1642719,1642814-1642941
          Length = 582

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +1

Query: 142 RQTSPHHRYFAFSNEKP 192
           R+ SPHHR  +FS+E+P
Sbjct: 131 RRISPHHRQCSFSHEEP 147


>12_02_0480 + 19533214-19534045,19534178-19534222,19535217-19535362
          Length = 340

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -3

Query: 142 GKGFDEPTVHGIVTFSVGGEHGENTGSVRFSSAPKH*AH 26
           GKG  E TV  ++    GG   E+       +APKH AH
Sbjct: 153 GKGGQEATVRLLIAAITGGGGMESLTDGAHVAAPKHPAH 191


>06_01_0036 + 364316-365758
          Length = 480

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = +3

Query: 87  PPTLKVTMPCTVGSSKPLPPDITTSPLFR 173
           PP LKVT   + GSS PL   +T   L R
Sbjct: 265 PPNLKVTALVSPGSSHPLELHLTNESLTR 293


>04_01_0418 -
           5531652-5531827,5535111-5535195,5535250-5535402,
           5535516-5535632,5536136-5536363
          Length = 252

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 60  TLPVFSPCSPPTLKVTMPCTVGSSKPLP 143
           T+   SPCS P L  +M   V  + PLP
Sbjct: 60  TVSALSPCSEPPLSASMRQMVVKASPLP 87


>02_03_0246 - 16807619-16808145,16808208-16808868
          Length = 395

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 19/54 (35%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
 Frame = +3

Query: 9   AERCGWCA*--CFGALLKRTLPVFSPCSPPTLKVTMPCTVGSSKPLPPDITTSP 164
           A RC  C    C G   +   P  SPC+ P      P T  SS P PP     P
Sbjct: 108 AARCWPCRPPCCCGRRRRAASPSASPCTTPPATARAPRT--SSTPGPPSAQAPP 159


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,987,730
Number of Sequences: 37544
Number of extensions: 381749
Number of successful extensions: 1163
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1162
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)