Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_N06
         (579 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    26   0.31 
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   2.2  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   2.9  
AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family p...    23   2.9  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   8.8  

>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 25.8 bits (54), Expect = 0.31
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = +1

Query: 103 SLCHVRSARRSPCRQT 150
           SL HVRS+R S C QT
Sbjct: 439 SLHHVRSSRESSCEQT 454


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 470 LSSVPLPWINDQIGNPEATSYV 535
           L S+PLP  +D +  P + +YV
Sbjct: 475 LPSLPLPGADDDLFGPASPAYV 496


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 7/25 (28%), Positives = 15/25 (60%)
 Frame = +3

Query: 429 CLWVENIKHQLSDSYRAYRCPGLTI 503
           C++V++I   ++     Y CPG+ +
Sbjct: 185 CIYVQSINLCMAGRLFGYLCPGMAL 209


>AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family
           protein protein.
          Length = 166

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 429 RKQSLPNTSTITKSNITVELNKA 361
           R  S+PNTS + KS I++   +A
Sbjct: 93  RITSVPNTSRLDKSEISLATKQA 115


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 87  PPTLKVTMPCTVGSSK 134
           PP    ++PC VG +K
Sbjct: 582 PPESVCSLPCEVGQAK 597


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,766
Number of Sequences: 438
Number of extensions: 4203
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16748661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)