Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_N05
(636 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 33 0.035
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 33 0.035
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc... 31 0.14
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar... 29 0.56
SPAC6B12.08 |mug185||DNAJ domain protein Jjj family|Schizosaccha... 28 0.98
SPBC36.08c |cog2||Golgi transport complex subunit Cog2 |Schizosa... 28 1.3
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 28 1.3
SPBC3B9.22c |dad4||DASH complex subunit Dad4|Schizosaccharomyces... 27 1.7
SPBC1604.07 |atp4||F0-ATPase subunit|Schizosaccharomyces pombe|c... 27 1.7
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ... 27 1.7
SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces p... 27 3.0
SPAC823.11 |||sphingosine-1-phosphate phosphatase |Schizosacchar... 27 3.0
SPCC5E4.10c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 27 3.0
SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2 |Schizos... 26 4.0
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 26 4.0
SPBC1347.10 |cdc23|mcm10|MCM-associated protein Mcm10|Schizosacc... 25 6.9
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po... 25 6.9
SPBC119.14 |rti1||Rad22 homolog Rti1|Schizosaccharomyces pombe|c... 25 6.9
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 25 6.9
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca... 25 6.9
SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 6.9
SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomy... 25 6.9
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 25 9.1
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 25 9.1
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma... 25 9.1
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 33.1 bits (72), Expect = 0.035
Identities = 23/116 (19%), Positives = 53/116 (45%), Gaps = 5/116 (4%)
Frame = +3
Query: 210 QNFQRLSSTITSNIEKISQNVSSMSKMVN-----QLQTAQDSQELRSQLRQIQNYTQKLA 374
+ F+ I S+I+++ + + SK +N +++ QE R+ L ++ N K
Sbjct: 1012 REFENALWDINSSIDELVKFIEFESKQMNSVKAERIELENQIQEQRTALSEVGNNENKYL 1071
Query: 375 KDTSNMIKDLMKQPCDHQGNKLNRERLSDEFMATLNKFQATQKLAAQKSKEDVKNV 542
K SN+ + + CD S++ +++++K + ++ K K + + V
Sbjct: 1072 KLMSNLKLHNLTEFCDQTTMDSTFPEYSEDELSSVDKSELVSNISVLKKKTEDREV 1127
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 33.1 bits (72), Expect = 0.035
Identities = 29/115 (25%), Positives = 54/115 (46%), Gaps = 4/115 (3%)
Frame = +3
Query: 219 QRLSSTITSNIEKISQNVSSMSKMVNQLQTAQDSQELRSQLRQIQNYTQKLAKDTSNMIK 398
Q L + SNI ++ Q+++ + NQL+ + EL+ +L+ ++ + L K
Sbjct: 877 QTLVLQLQSNITELKQDITLQRTVRNQLEI--QTTELKERLKFMEERQENLQSKLIAANK 934
Query: 399 DLMKQP--CDHQGNKLNRERLSDEF-MATLNKFQATQK-LAAQKSKEDVKNVKAQ 551
D + P + + + ER ++ MA L K QK LA++K+ E + Q
Sbjct: 935 DTTQNPDNVEVEAISIELERTKEKLRMAELEKSNIQQKYLASEKTLEMMNETHEQ 989
>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 997
Score = 31.1 bits (67), Expect = 0.14
Identities = 15/46 (32%), Positives = 28/46 (60%)
Frame = +3
Query: 246 NIEKISQNVSSMSKMVNQLQTAQDSQELRSQLRQIQNYTQKLAKDT 383
NIEKI + ++ + K+ L A QE+++ +QN T+ ++K+T
Sbjct: 788 NIEKIEEKLTEVDKV--SLSDAFPDQEIKNSRTSVQNGTRSVSKNT 831
>SPBC28E12.03 |rga4||GTPase activating protein
Rga4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 933
Score = 29.1 bits (62), Expect = 0.56
Identities = 18/61 (29%), Positives = 30/61 (49%)
Frame = +3
Query: 327 LRSQLRQIQNYTQKLAKDTSNMIKDLMKQPCDHQGNKLNRERLSDEFMATLNKFQATQKL 506
L+ +L NY + N+ + + Q C+ + N+ + R SD F T N F AT++
Sbjct: 423 LKKRLTNSSNYEASPRAKSLNLSQVSLHQACEPEYNRSSLVRASDVF--TSNVFDATEES 480
Query: 507 A 509
A
Sbjct: 481 A 481
>SPAC6B12.08 |mug185||DNAJ domain protein Jjj
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 380
Score = 28.3 bits (60), Expect = 0.98
Identities = 21/82 (25%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Frame = +3
Query: 315 DSQELRSQLRQIQNYTQKLAKDTSNMIKDLMKQPCDHQGNKLNRERLSD-EFMATLNKFQ 491
D+ R RQ Q Q + + +++DL+ + CD + N +LSD E +L +
Sbjct: 163 DAATRRLMKRQNQRQIQYCIQRYNELVRDLIGKACDLDPRRKNVVKLSDGERYNSLQ--E 220
Query: 492 ATQKLAAQKSKEDVKNVKAQSV 557
A++K + + ++ + K QS+
Sbjct: 221 ASRKQSERDRRQYQETFKNQSI 242
>SPBC36.08c |cog2||Golgi transport complex subunit Cog2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 191
Score = 27.9 bits (59), Expect = 1.3
Identities = 20/63 (31%), Positives = 31/63 (49%)
Frame = +3
Query: 201 DGEQNFQRLSSTITSNIEKISQNVSSMSKMVNQLQTAQDSQELRSQLRQIQNYTQKLAKD 380
D Q+F L S + S K+S +SS+ + QL+ ++ Q L +IQN K +D
Sbjct: 71 DNYQDFVHLGSRMKSGNTKVSTLISSIHRSEEQLKNSK--QSLIGHSTEIQN-NLKHKQD 127
Query: 381 TSN 389
N
Sbjct: 128 VEN 130
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 27.9 bits (59), Expect = 1.3
Identities = 30/111 (27%), Positives = 55/111 (49%), Gaps = 3/111 (2%)
Frame = +3
Query: 231 STITSNIEKISQNVSSMSKMV-NQLQTAQDS-QELRS-QLRQIQNYTQKLAKDTSNMIKD 401
S + + ++ +N ++ S ++ NQL T + S E+ S +L+ NY ++L K ++ K
Sbjct: 521 SGVRTKLQVFEENKTNKSAILANQLMTLKSSFSEVMSYELKDDDNYNEELDKLVEDVRKK 580
Query: 402 LMKQPCDHQGNKLNRERLSDEFMATLNKFQATQKLAAQKSKEDVKNVKAQS 554
L ++ + RERL E +L+ Q+ L K K K +K+ S
Sbjct: 581 LQEKEEAESSLRSVRERL--EIRISLS-VQSINDLTENK-KIKTKTLKSYS 627
>SPBC3B9.22c |dad4||DASH complex subunit Dad4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 72
Score = 27.5 bits (58), Expect = 1.7
Identities = 14/65 (21%), Positives = 33/65 (50%)
Frame = +3
Query: 207 EQNFQRLSSTITSNIEKISQNVSSMSKMVNQLQTAQDSQELRSQLRQIQNYTQKLAKDTS 386
E+ L I SN+EK++++++ ++ + + + + EL SQ+ K + +
Sbjct: 6 EEQQSALLGRIISNVEKLNESITRLNHSLQLINMSNMNVELASQMWANYARNVKFHLEET 65
Query: 387 NMIKD 401
+ +KD
Sbjct: 66 HTLKD 70
>SPBC1604.07 |atp4||F0-ATPase subunit|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 27.5 bits (58), Expect = 1.7
Identities = 19/108 (17%), Positives = 56/108 (51%), Gaps = 2/108 (1%)
Frame = +3
Query: 228 SSTITSNIEKIS--QNVSSMSKMVNQLQTAQDSQELRSQLRQIQNYTQKLAKDTSNMIKD 401
+S I I++++ Q V S+++ + T++++ + +++ +++ LAK+ +++
Sbjct: 136 TSAIRERIDQVASLQEVESVTQAL--FHTSKETARMEAEIFELEQRVA-LAKEAKSVLDS 192
Query: 402 LMKQPCDHQGNKLNRERLSDEFMATLNKFQATQKLAAQKSKEDVKNVK 545
+ + + + +ERL ++ +A +N +TQK E + ++
Sbjct: 193 WVHHEANVRAEQ--QERLVEDVLARVNSKVSTQKFQQDALNESLGEIE 238
>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1044
Score = 27.5 bits (58), Expect = 1.7
Identities = 41/143 (28%), Positives = 71/143 (49%), Gaps = 25/143 (17%)
Frame = +3
Query: 252 EKISQNVSSMSKMVNQL-QTAQDSQELRSQLRQIQNYTQKL-----------------AK 377
+ + + +S + N+L + + QEL+SQL Q +N + L K
Sbjct: 792 DNLGNKENIISDLKNKLSEESTRLQELQSQLNQDKNQIETLNERISAAADELSSMESINK 851
Query: 378 DTSNMIKDLMKQPCDHQ------GNKLNRERLSDEFMATLNK-FQATQKLAAQKSKEDVK 536
+ +N +K L KQ C + GNKL +E E +++L K +A K A+ SKE +K
Sbjct: 852 NQANELK-LAKQKCSNLQEKINFGNKLAKEH--TEKISSLEKDLEAATKTASTLSKE-LK 907
Query: 537 NVKAQSVNIGDPFAVSNANNSKE 605
VK+++ ++ +VSN + +KE
Sbjct: 908 TVKSENDSLK---SVSNDDQNKE 927
>SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 26.6 bits (56), Expect = 3.0
Identities = 20/108 (18%), Positives = 50/108 (46%), Gaps = 2/108 (1%)
Frame = +3
Query: 252 EKISQNVSSMSKMVNQLQTAQDSQELRSQLRQIQNYTQKLAKDTSNMIKDLMKQPCDHQG 431
+KI ++V+S + ++++ + + ++++K T + + ++ +
Sbjct: 123 DKIDESVASYDSSTHLRRSSRSKKPVNYNSSSESESEEQISKATKKVKQKEEEEYVEEVD 182
Query: 432 NK-LNRERLSDEFMATLNKFQATQKLAAQKSKEDVKNVKAQS-VNIGD 569
K L E SDEF + + T ++S+ KN++ +S +N+ D
Sbjct: 183 EKSLKNESSSDEFEPVVPEQLETPISKRRRSRSSAKNLEKESTMNLDD 230
>SPAC823.11 |||sphingosine-1-phosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 411
Score = 26.6 bits (56), Expect = 3.0
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = -2
Query: 614 FYQFFAVISVANS-KRISNVYRLGLYVLYIFLALLSR*FLCGL 489
FY F ++S+++S IS + L L +LYI L R CG+
Sbjct: 156 FYSLFLLLSMSDSMSSISYYFLLSLVLLYIASISLGR-IYCGM 197
>SPCC5E4.10c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 101
Score = 26.6 bits (56), Expect = 3.0
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = +3
Query: 225 LSSTITSNIEKISQNVSSMSKMVNQLQTAQDSQELRSQLRQIQNYTQKLAKDTS 386
LS+ T N E + S K Q+Q + + + R + ++ +Y+QK + T+
Sbjct: 47 LSNRKTKNPES-DRRRQSRKKKSTQIQASDEMKHRRHHVHKVHHYSQKQSSSTT 99
>SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 980
Score = 26.2 bits (55), Expect = 4.0
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
Frame = +3
Query: 411 QPCDHQGNKLNRERLSDEFMATLNKFQATQKLAAQKSKEDVKNVKA-QSVNIGDPFA--- 578
+P +L RER + A L K+ A KLAA+K+KE+ + K + I P A
Sbjct: 21 EPRPKTEKELERER---QKAAKLEKYHA--KLAAKKAKEEARKPKLDKKAKIASPVAEYV 75
Query: 579 -VSNANNSKELIEMDDASLR 635
+ K L ++D +L+
Sbjct: 76 EKTTPGEKKVLQDLDSPALK 95
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 26.2 bits (55), Expect = 4.0
Identities = 26/115 (22%), Positives = 52/115 (45%), Gaps = 3/115 (2%)
Frame = +3
Query: 213 NFQRLSSTITSNIEKISQNVSSMSKMVNQLQ-TAQDSQELRSQLRQIQNYTQKLAKDTSN 389
+++ S +S + +S VSS++K VN+L A EL ++ + + +L K
Sbjct: 1214 SYKEKLSLASSENKDLSNKVSSLTKQVNELSPKASKVPELERKITNLMHEYSQLGKTFE- 1272
Query: 390 MIKDLMKQPCDHQGNKLNRERLSDEFMATLNKFQATQKLAA--QKSKEDVKNVKA 548
D + L R ++E + ++ ++ +KL QK E+VK ++
Sbjct: 1273 ----------DEKRKALIASRDNEELRSLKSELESKRKLEVEYQKVLEEVKTTRS 1317
>SPBC1347.10 |cdc23|mcm10|MCM-associated protein
Mcm10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 593
Score = 25.4 bits (53), Expect = 6.9
Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
Frame = +2
Query: 500 KISGSEEQGRCKERK--GPICKHW 565
+I S+ G C R+ G +CKHW
Sbjct: 289 EIGRSKHLGYCSSRRKSGELCKHW 312
>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 670
Score = 25.4 bits (53), Expect = 6.9
Identities = 26/124 (20%), Positives = 56/124 (45%), Gaps = 6/124 (4%)
Frame = +3
Query: 210 QNFQRLSSTITSNIEKISQNVSSMSKMVNQLQTAQDSQELRSQLRQIQNYTQKLAKDTSN 389
+NF +ST+ + + N SS+ + + Q +++ L ++ ++ Q L +T N
Sbjct: 378 ENFVHWNSTVYQELLNLKSNNSSVDGVKTRRQLLEENALLSHKVLKLTEEIQDL--ETLN 435
Query: 390 MIKDLMKQPCDHQGNKLNRE--RLSDEFMATLNKFQATQ--KLAAQKSKEDV--KNVKAQ 551
+ ++ + N++ E RLS +++ + KL S+E++ N K +
Sbjct: 436 QLNTEIEARQSEKLNEVQEETQRLSQLLISSQPALTEVKHLKLCLSDSQEELLQLNAKLE 495
Query: 552 SVNI 563
NI
Sbjct: 496 KANI 499
>SPBC119.14 |rti1||Rad22 homolog Rti1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 371
Score = 25.4 bits (53), Expect = 6.9
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +3
Query: 459 DEFMATLNKFQATQKLAAQKSKEDVKNVKAQSVNIGDPFAVSNA 590
+EF LN+F+ +K++ K K +AQ V I P NA
Sbjct: 272 EEFEELLNQFEGDEKVSVDKIDAHDKMTEAQVVKI-PPVQFMNA 314
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 25.4 bits (53), Expect = 6.9
Identities = 31/134 (23%), Positives = 58/134 (43%), Gaps = 8/134 (5%)
Frame = +3
Query: 237 ITSNIEKISQNVSSMSKMVNQLQTAQDS--QELRSQLRQIQNYTQKLAKDTSNMIKDLMK 410
+TSN+EK + +SS+ + V L+ ++S + L + + N L + ++ I L +
Sbjct: 613 LTSNLEKKNLVISSLRETVAMLEKERESIKKYLSGNAKDLDN--TNLMEILNDKISVLQR 670
Query: 411 QPCDHQGNKLNRERLSDEFMATLNKFQAT------QKLAAQKSKEDVKNVKAQSVNIGDP 572
Q D + E +E + K A+ +K A + +KN + N+ D
Sbjct: 671 QLTDVKDELDVSEEEREEAIVAGQKLSASFELMSNEKQALELKYSSLKNELINAQNLLDR 730
Query: 573 FAVSNANNSKELIE 614
+ SK+L E
Sbjct: 731 REEELSELSKKLFE 744
>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 2410
Score = 25.4 bits (53), Expect = 6.9
Identities = 24/110 (21%), Positives = 49/110 (44%)
Frame = +3
Query: 291 VNQLQTAQDSQELRSQLRQIQNYTQKLAKDTSNMIKDLMKQPCDHQGNKLNRERLSDEFM 470
V + T +D Q LRS ++Q K +KD + + LMK + + + R +
Sbjct: 1863 VEETFTDEDGQALRSFSEKLQKLNAKNSKDDLCIEQYLMKS----ERSFFHERRAIKLGL 1918
Query: 471 ATLNKFQATQKLAAQKSKEDVKNVKAQSVNIGDPFAVSNANNSKELIEMD 620
NK + L++ E+ +++ + D A+++ +N +L + D
Sbjct: 1919 QKPNKLHVNE-LSSHSGTEESESLSNGQTSYDDIIAMTDESNYTQLGDDD 1967
>SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 700
Score = 25.4 bits (53), Expect = 6.9
Identities = 21/62 (33%), Positives = 29/62 (46%)
Frame = +3
Query: 207 EQNFQRLSSTITSNIEKISQNVSSMSKMVNQLQTAQDSQELRSQLRQIQNYTQKLAKDTS 386
EQ Q LS T + K SM Q + Q+L +QLR I ++ LA++ S
Sbjct: 362 EQTDQLLSFKETMDSFKFILG-PSMENQALQQGILAEQQDLVAQLRDIVLRSETLAENPS 420
Query: 387 NM 392
NM
Sbjct: 421 NM 422
>SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 756
Score = 25.4 bits (53), Expect = 6.9
Identities = 18/77 (23%), Positives = 39/77 (50%)
Frame = +3
Query: 144 SEVLTLRMETSYQGGVSYGDGEQNFQRLSSTITSNIEKISQNVSSMSKMVNQLQTAQDSQ 323
S +++L E S V+ + + +++S I N++ QN+++ M+ +LQ +
Sbjct: 79 SSIVSLLQELSTLQSVAENT-QSSIVQMTSEI-KNLDFAKQNLATSMTMLKRLQMLVTAY 136
Query: 324 ELRSQLRQIQNYTQKLA 374
E LRQ Q + + ++
Sbjct: 137 EKLRTLRQNQKFGEAIS 153
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 25.0 bits (52), Expect = 9.1
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +3
Query: 213 NFQRLSSTITSNIEKISQNVSSMSKMVNQLQTAQDS 320
NF RL+ IT++ E++S +++ +Q Q +DS
Sbjct: 122 NFDRLNDNITTDDEQLSPVLTANQGFQSQEQYEEDS 157
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 25.0 bits (52), Expect = 9.1
Identities = 17/57 (29%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
Frame = +3
Query: 156 TLRMETSYQGGVSY-GDGEQNFQRLSSTITSNIEKISQNVSSMSKMVNQLQTAQDSQ 323
T + T +Y G F RLSST+TS+I S+ T SQ
Sbjct: 726 TSSVSTPLSNSSAYPSSGSSTFSRLSSTLTSSIIPTETFGSTSGSATGTRPTGSSSQ 782
>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
3|||Manual
Length = 963
Score = 25.0 bits (52), Expect = 9.1
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = +1
Query: 235 LSPVILRKYHKMFHPCQRW 291
LSP++L +Y +FH +W
Sbjct: 940 LSPILLFQYETLFHSGYKW 958
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,394,404
Number of Sequences: 5004
Number of extensions: 44267
Number of successful extensions: 170
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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