Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_N05
         (636 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1076 - 8474869-8474934,8475028-8475128,8475248-8475405,847...    57   1e-08
03_06_0435 + 33901836-33902453                                         30   1.8  
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287...    28   5.4  
08_02_0750 + 20786096-20786475,20786689-20786822,20786906-20787057     28   7.1  
12_02_0117 - 13860418-13860524,13860612-13860810,13860969-138611...    27   9.4  
10_02_0003 + 4022220-4022900                                           27   9.4  
06_03_0266 + 18933638-18933961,18934179-18934541                       27   9.4  

>01_01_1076 -
           8474869-8474934,8475028-8475128,8475248-8475405,
           8475554-8475628,8476528-8476667,8477284-8477377,
           8478063-8478271
          Length = 280

 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 30/102 (29%), Positives = 57/102 (55%), Gaps = 5/102 (4%)
 Frame = +3

Query: 228 SSTITSNIEKISQNVSSMSKMVNQLQTAQDSQELRSQLRQIQNYTQKLAKDTSNMIKDLM 407
           S  + S + +I+  VS+  ++VN L T +D+ +LR ++ + + +  +L KDTS  +K   
Sbjct: 33  SQAVASGVFQINTAVSTFQRLVNTLGTPKDTPDLRERIHKTRQHITQLVKDTSEKLKQAS 92

Query: 408 KQPCDHQ-----GNKLNRERLSDEFMATLNKFQATQKLAAQK 518
           +   DH+       K+   +L+ +F A L +FQ  Q+LA ++
Sbjct: 93  E--ADHRVEVSASKKIADAKLAKDFQAVLKEFQKAQRLAVER 132


>03_06_0435 + 33901836-33902453
          Length = 205

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 18/57 (31%), Positives = 31/57 (54%)
 Frame = +3

Query: 246 NIEKISQNVSSMSKMVNQLQTAQDSQELRSQLRQIQNYTQKLAKDTSNMIKDLMKQP 416
           +I KI+ N  ++ K ++       S+ L S+L ++   T  LA+  +NMIKD+   P
Sbjct: 102 HISKIATNAKAI-KWLHDNHPHLWSRSLFSELSKVDYVTNNLAESFNNMIKDIKGLP 157


>05_01_0367 -
           2874429-2874483,2876274-2876345,2876453-2879613,
           2879715-2879973,2880060-2880346,2880423-2880758,
           2880862-2881003,2881077-2881297,2881379-2881540,
           2881617-2881775,2881860-2882159,2882834-2883097,
           2883133-2883243,2883902-2883988
          Length = 1871

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 15/72 (20%), Positives = 27/72 (37%)
 Frame = +3

Query: 339 LRQIQNYTQKLAKDTSNMIKDLMKQPCDHQGNKLNRERLSDEFMATLNKFQATQKLAAQK 518
           +  I     K   D   +IK       + +  +   E   +     LNK +     +A+K
Sbjct: 732 MENINETISKAKNDVKKLIKQFRDNQLEAEAGRTTMESFENRVNEVLNKARDVAGSSAEK 791

Query: 519 SKEDVKNVKAQS 554
           S  +  N+KA +
Sbjct: 792 SLSESNNLKAMA 803


>08_02_0750 + 20786096-20786475,20786689-20786822,20786906-20787057
          Length = 221

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 11/39 (28%), Positives = 24/39 (61%)
 Frame = +3

Query: 312 QDSQELRSQLRQIQNYTQKLAKDTSNMIKDLMKQPCDHQ 428
           QD+ +LRS+  ++Q+  Q++      ++K+L  Q  ++Q
Sbjct: 69  QDALQLRSEAGKLQSIRQEMTAKVQGLLKELEHQNSENQ 107


>12_02_0117 -
           13860418-13860524,13860612-13860810,13860969-13861148,
           13861230-13861375,13862185-13862323,13863076-13863153,
           13863654-13863722,13863806-13863925,13864792-13864875,
           13864961-13865032,13865204-13865345,13866016-13866023
          Length = 447

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
 Frame = +3

Query: 153 LTLRMETSYQGGVSY-GDGEQNFQRLSSTIT-SNIEKISQNVSSMSKMVNQLQTAQDSQE 326
           LTL  E +   G+    +GE  F  + + +  + +E+I   VSS++ + NQL   Q   E
Sbjct: 297 LTLNSENTLDFGIYLLENGEDGFVYVGNAVNPATLEQIF-GVSSLAGVPNQLVLEQYDNE 355

Query: 327 LRSQLRQIQN 356
           L  ++ ++ N
Sbjct: 356 LSRKVNEVVN 365


>10_02_0003 + 4022220-4022900
          Length = 226

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/49 (24%), Positives = 25/49 (51%)
 Frame = +3

Query: 243 SNIEKISQNVSSMSKMVNQLQTAQDSQELRSQLRQIQNYTQKLAKDTSN 389
           +N+E + QN++ +  M+ Q+Q  Q + E   + +     +  +   TSN
Sbjct: 100 ANMEAMRQNMTCLQDMLRQMQEQQQAYEAARRAKAASTQSSSIRCVTSN 148


>06_03_0266 + 18933638-18933961,18934179-18934541
          Length = 228

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +3

Query: 330 RSQLRQIQNYTQ-KLAKDTSNMIKDLMKQPCDH 425
           +S  R++ NY + KLA+DT    KD+M    +H
Sbjct: 152 KSSCRELFNYNRAKLAQDTPQGAKDMMTTALEH 184


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,127,145
Number of Sequences: 37544
Number of extensions: 242581
Number of successful extensions: 669
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 669
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)