Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_N03
(646 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 345 4e-96
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 190 1e-49
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 188 6e-49
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 139 3e-34
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom... 28 1.0
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 27 1.8
SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi... 27 3.1
SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|... 27 3.1
SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces po... 26 5.3
SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|c... 25 7.1
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 345 bits (847), Expect = 4e-96
Identities = 157/213 (73%), Positives = 184/213 (86%)
Frame = +2
Query: 8 AKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNAVLSIHQLVENTDETYCIDNEALYDICY 187
+KIREEYPDR+M T+SV P+PK SDTVVEPYNA LS+HQLVEN+DET+CIDNEAL I
Sbjct: 153 SKIREEYPDRMMATFSVAPAPKSSDTVVEPYNATLSMHQLVENSDETFCIDNEALSSIFA 212
Query: 188 RTLKVPNPTYGDLNHLVSLTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAP 367
TLK+ +P+Y DLNHLVS M+GVTT RFPG+LN+DLRKLAVNMVPFPRLHFFM GFAP
Sbjct: 213 NTLKIKSPSYDDLNHLVSAVMAGVTTSFRFPGELNSDLRKLAVNMVPFPRLHFFMVGFAP 272
Query: 368 LTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLS 547
L + GS ++A++VPELTQQMFDA NMM A DPRHGRYLTVAA+FRG++SMKEVDEQ+ S
Sbjct: 273 LAAIGSSSFQAVSVPELTQQMFDANNMMVAADPRHGRYLTVAALFRGKVSMKEVDEQIRS 332
Query: 548 IQNKNSSYFVEWIPNNVKTAVCDIPPKGLKMSS 646
+Q KNS+YFVEWIP+NV AVC +PPK LKMS+
Sbjct: 333 VQTKNSAYFVEWIPDNVLKAVCSVPPKDLKMSA 365
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 190 bits (464), Expect = 1e-49
Identities = 82/206 (39%), Positives = 129/206 (62%)
Frame = +2
Query: 11 KIREEYPDRIMNTYSVVPSPKVSDTVVEPYNAVLSIHQLVENTDETYCIDNEALYDICYR 190
++ EY + +SV P+P+VS +VVEPYN+VL+ H ++N+D T+ +DNEA YDIC R
Sbjct: 160 RLNMEYGKKSNLQFSVYPAPQVSTSVVEPYNSVLTTHATLDNSDCTFMVDNEACYDICRR 219
Query: 191 TLKVPNPTYGDLNHLVSLTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPL 370
L + PTY +LN L++ +S +T LRF G LN DL + N+VP+PR+HF + ++P+
Sbjct: 220 NLDIERPTYENLNRLIAQVVSSITASLRFAGSLNVDLNEFQTNLVPYPRIHFPLVTYSPI 279
Query: 371 TSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLSI 550
S + + +V E+T Q F+ N M CDPR GRY+ ++RG + ++V + SI
Sbjct: 280 VSAAKAFHESNSVQEITNQCFEPYNQMVKCDPRTGRYMATCLLYRGDVIPRDVQAAVTSI 339
Query: 551 QNKNSSYFVEWIPNNVKTAVCDIPPK 628
+++ + FV+W P K +C PP+
Sbjct: 340 KSRRTIQFVDWCPTGFKIGICYEPPQ 365
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 188 bits (458), Expect = 6e-49
Identities = 82/211 (38%), Positives = 130/211 (61%)
Frame = +2
Query: 11 KIREEYPDRIMNTYSVVPSPKVSDTVVEPYNAVLSIHQLVENTDETYCIDNEALYDICYR 190
++ EY + +SV P+P+VS +VVEPYN+VL+ H ++ D T+ +DNE+ YDIC R
Sbjct: 156 RLAMEYTKKSKLQFSVYPAPQVSTSVVEPYNSVLTTHATLDLADCTFMVDNESCYDICRR 215
Query: 191 TLKVPNPTYGDLNHLVSLTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPL 370
L + P+Y +LN L++ +S +T LRF G LN DL + N+VP+PR+HF + +AP+
Sbjct: 216 NLDIERPSYENLNRLIAQVVSSITASLRFEGSLNVDLAEFQTNLVPYPRIHFPLVTYAPI 275
Query: 371 TSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLSI 550
S + + +V E+T Q F+ N M CDPR GRY+ ++RG + ++V + +I
Sbjct: 276 VSAAKAFHESNSVQEITNQCFEPYNQMVKCDPRAGRYMATCLLYRGDVIPRDVQAAVTTI 335
Query: 551 QNKNSSYFVEWIPNNVKTAVCDIPPKGLKMS 643
+ K + FV+W P K +CD PP+ ++ S
Sbjct: 336 KAKRTIQFVDWCPTGFKIGICDRPPQHIEGS 366
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 139 bits (337), Expect = 3e-34
Identities = 69/210 (32%), Positives = 120/210 (57%), Gaps = 5/210 (2%)
Frame = +2
Query: 11 KIREEYPDRIMNTYSVVP-SPKVSDTVVEPYNAVLSIHQLVENTDETYCIDNEALYDICY 187
++ + YP +I+ TYSV P S VSD VV+PYN++L++ +L N D +DN AL I
Sbjct: 156 RLNDRYPKKIIQTYSVFPNSQSVSDVVVQPYNSLLALKRLTLNADSVVVLDNAALAHIAA 215
Query: 188 RTLKVPNPTYGDLNHLVSLTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAP 367
L NPT+ N LVS MS TT LR+PG +N DL + +++P PR HF + + P
Sbjct: 216 DRLHTQNPTFHQQNQLVSTVMSASTTTLRYPGYMNNDLVSIIASLIPSPRCHFLLTSYTP 275
Query: 368 LTSRGSQQYRAL---TVPELTQQMFDAKNMMAACDP-RHGRYLTVAAIFRGRMSMKEVDE 535
T++ ++ +A+ TV ++ +++ KN M + +P + ++++ I +G +V +
Sbjct: 276 FTNQQVEEAKAIRKTTVLDVMRRLLLPKNQMVSVNPSKKSCFISILDIIQGEADPADVHK 335
Query: 536 QMLSIQNKNSSYFVEWIPNNVKTAVCDIPP 625
+L I+ + + F+ W P +++ A+ P
Sbjct: 336 SLLRIRERRYASFIPWGPASIQVALSKKSP 365
>SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1021
Score = 28.3 bits (60), Expect = 1.0
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
Frame = +2
Query: 53 SVVPSPKVSDTVVE------PYNAVLSIHQLVENTDETYCIDNEALYDICYRTLKVP 205
S+ P+P+ DTV+ PYNA+ +Q V+ T + A I Y K+P
Sbjct: 924 SLTPNPQQQDTVINAVPTFAPYNAMTKFNQKVKVMPGTGKVGKAARESIAYFMKKLP 980
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 27.5 bits (58), Expect = 1.8
Identities = 25/94 (26%), Positives = 38/94 (40%)
Frame = +3
Query: 21 KSTPTES*THTQSSPRPKYQTPSSNPTMQFSLSTS*SKTQMKPXXXXXXXXXXXVIEPLK 200
++T T + T S P T S+ T+ S S+S S T P +
Sbjct: 569 ETTTTMTTTTCSSRPEETISTVSTTSTVSESGSSSASITSTYPSSTLSMTTSHLSSSSVH 628
Query: 201 FLIPHTVT*TTWCR*PCLALPPASGSPVS*MRIS 302
H+ + R ++LPP++GS S RIS
Sbjct: 629 SSSAHSSS----SRSSSMSLPPSAGSSTSLQRIS 658
>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 865
Score = 26.6 bits (56), Expect = 3.1
Identities = 22/68 (32%), Positives = 32/68 (47%)
Frame = +2
Query: 122 QLVENTDETYCIDNEALYDICYRTLKVPNPTYGDLNHLVSLTMSGVTTCLRFPGQLNADL 301
Q+ NTD + N LY RT+ DLN SL + GV +F G + +
Sbjct: 301 QVCTNTDSSRNAGNAILYQ-AVRTIL-------DLNSDSSLRVLGVNILAKFLGNRDNNT 352
Query: 302 RKLAVNMV 325
R +A+NM+
Sbjct: 353 RYVALNML 360
>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
Mts4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 26.6 bits (56), Expect = 3.1
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = +3
Query: 129 SKTQMKPXXXXXXXXXXXVIEPLKFLIPHTVT 224
S TQ+K V +PLKFL PH T
Sbjct: 75 SLTQLKEIIRTSTSSMTAVPKPLKFLRPHYFT 106
>SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 449
Score = 25.8 bits (54), Expect = 5.3
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = +2
Query: 137 TDETYCIDNEALYDICYRTLKVPNPTYGDLNHLVS 241
T Y + E YDIC L T LNHL+S
Sbjct: 256 TSFLYALAGELDYDICVLNLAEKGLTDDRLNHLLS 290
>SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 554
Score = 25.4 bits (53), Expect = 7.1
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +2
Query: 53 SVVPSPKVSDTVVEPYNAVLSIHQLVENTDETYCIDNEALYDI 181
SV SPK + Y AV +IH++ +T + E LY I
Sbjct: 272 SVYESPKFYLAKGDDYKAVETIHKIARINGKTCTLTVEELYAI 314
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,732,291
Number of Sequences: 5004
Number of extensions: 55579
Number of successful extensions: 198
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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