Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_N02
         (593 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    27   1.6  
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha...    25   6.3  
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    25   8.3  
SPCC757.13 |||membrane transporter |Schizosaccharomyces pombe|ch...    25   8.3  

>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 589

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = +2

Query: 2   HEGKLETRAATLKANLDEHNAEKRQLLADQIKTQRNLQK 118
           HE +L+   A  KA L+E N +KR+L   Q+K Q  L +
Sbjct: 367 HEERLKRINANKKA-LEELNQKKRELAQQQLKEQELLMQ 404


>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1011

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -3

Query: 135 LMKSKSFWRFLWVFIWSARSCLFSALCSSRFAFRVAALVSN 13
           LM    +W  +W+ IW+AR    + +    FAF V+ + +N
Sbjct: 269 LMWMAIWWEIIWLSIWAARYA--AKVIPYFFAFFVSFISNN 307


>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1526

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 12/43 (27%), Positives = 26/43 (60%)
 Frame = +2

Query: 26   AATLKANLDEHNAEKRQLLADQIKTQRNLQKLLDFISQFKETS 154
            A  LKA  D+ N+EK ++ + Q++ ++  Q+L   I+  ++ +
Sbjct: 1460 AIELKALKDQINSEKAKMFSVQVQYEKREQELQKRIASLEKVN 1502


>SPCC757.13 |||membrane transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 522

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 120 SFWRFLWVFIWSARSCLFSA 61
           S++ F  VF+WSA  CL +A
Sbjct: 142 SYFIFCNVFLWSAMVCLMAA 161


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,786,258
Number of Sequences: 5004
Number of extensions: 26232
Number of successful extensions: 50
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)