Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_N02
         (593 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X75304-1|CAA53052.1| 3259|Homo sapiens giantin protein.                32   1.8  
D25542-1|BAA05025.1| 3225|Homo sapiens golgi antigen gcp372 prot...    32   1.8  
BC057227-1|AAH57227.1|  318|Homo sapiens Unknown (protein for IM...    32   1.8  

>X75304-1|CAA53052.1| 3259|Homo sapiens giantin protein.
          Length = 3259

 Score = 31.9 bits (69), Expect = 1.8
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = +2

Query: 2    HEGKLETRAATLKANLDEHNAEKRQLLADQIKTQRNLQKLLDFI-SQFKE 148
            H  K +   A+ K  LD+  +E  ++LAD +K ++ LQ   + + SQ K+
Sbjct: 2069 HRKKAQAELASFKVLLDDTQSEAARVLADNLKLKKELQSNKESVKSQMKQ 2118


>D25542-1|BAA05025.1| 3225|Homo sapiens golgi antigen gcp372 protein.
          Length = 3225

 Score = 31.9 bits (69), Expect = 1.8
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = +2

Query: 2    HEGKLETRAATLKANLDEHNAEKRQLLADQIKTQRNLQKLLDFI-SQFKE 148
            H  K +   A+ K  LD+  +E  ++LAD +K ++ LQ   + + SQ K+
Sbjct: 2035 HRKKAQAELASFKVLLDDTQSEAARVLADNLKLKKELQSNKESVKSQMKQ 2084


>BC057227-1|AAH57227.1|  318|Homo sapiens Unknown (protein for
           IMAGE:4702419) protein.
          Length = 318

 Score = 31.9 bits (69), Expect = 1.8
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = +2

Query: 2   HEGKLETRAATLKANLDEHNAEKRQLLADQIKTQRNLQKLLDFI-SQFKE 148
           H  K +   A+ K  LD+  +E  ++LAD +K ++ LQ   + + SQ K+
Sbjct: 154 HRKKAQAELASFKVLLDDTQSEAARVLADNLKLKKELQSNKESVKSQMKQ 203


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 59,496,152
Number of Sequences: 237096
Number of extensions: 813576
Number of successful extensions: 2034
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1953
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2034
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6268037466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)