Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_N01
         (575 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||...    25   7.9  
SPCC18.15 |||WD repeat protein, human WRDR85 family|Schizosaccha...    25   7.9  
SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex ...    25   7.9  
SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC su...    25   7.9  
SPAC1A6.02 ||SPAC23C4.21|WD repeat protein, human WDR55 family|S...    25   7.9  

>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1116

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
 Frame = +1

Query: 352  IRKNINVVCQYFIVNTINYT-FKLEITHINFY--QVSHPLL*ICIINYVPKYDTV*RTNI 522
            I   I+++     +N + Y  F+   T I+ +   VS   +  C+ NY P  + + R   
Sbjct: 877  INAEISMIADLDHLNIVQYLGFEKTETDISIFLEYVSGGSIGRCLRNYGPFEEQLVRFVS 936

Query: 523  IYVLYKV*LLHSRGL 567
              VLY +  LHS+G+
Sbjct: 937  RQVLYGLSYLHSKGI 951


>SPCC18.15 |||WD repeat protein, human WRDR85
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 310

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 9/35 (25%), Positives = 15/35 (42%)
 Frame = +2

Query: 5   EDNREAAQGNDESCLAILNNFYSDGVKWHDVACHH 109
           +DN     G D++ L   +    +   W D+  HH
Sbjct: 152 QDNNLLYSGGDDAALVCYDQRIPNSCIWRDIQVHH 186


>SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex
           subunit Orp3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -3

Query: 414 KRIINCIYYKILTH 373
           +R+I CI Y ILTH
Sbjct: 275 ERVIECIRYSILTH 288


>SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC
           subunit Psc3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 962

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 95  VACHHVKPFVCEDSDELLN 151
           V C ++  F+CE S ELLN
Sbjct: 227 VFCLNIMTFLCEKSKELLN 245


>SPAC1A6.02 ||SPAC23C4.21|WD repeat protein, human WDR55
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 361

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +3

Query: 267 GCLRLSYLLPNNY 305
           GC+RL ++LPN Y
Sbjct: 260 GCIRLLHILPNKY 272


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,177,849
Number of Sequences: 5004
Number of extensions: 41797
Number of successful extensions: 86
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)