Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_M24
(645 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 338 5e-94
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 338 5e-94
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 338 5e-94
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 103 2e-23
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 62 5e-11
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 59 6e-10
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 31 0.11
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 31 0.19
SPAC631.01c |acp2||F-actin capping protein beta subunit |Schizos... 27 1.8
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 26 4.0
SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces p... 26 4.0
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos... 26 4.0
SPAC15E1.05c |||ethanolamine-phosphate cytidylyltransferase |Sch... 26 4.0
SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr 3|||Ma... 26 4.0
SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||... 26 5.3
SPBPJ4664.05 |||conserved fungal protein|Schizosaccharomyces pom... 25 7.1
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 25 7.1
SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre... 25 9.3
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 25 9.3
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 338 bits (830), Expect = 5e-94
Identities = 155/208 (74%), Positives = 178/208 (85%)
Frame = +3
Query: 6 RDVYKIGGIGTVPVGRVETGILKPGTVVVFAPANITTEVKSVEMHHEALQEAVPGDNVGF 185
+DVYKIGGIGTVPVGRVETG++KPG +V FAPA +TTEVKSVEMHHE+L +PGDNVGF
Sbjct: 249 QDVYKIGGIGTVPVGRVETGVIKPGMIVTFAPAGVTTEVKSVEMHHESLDAGLPGDNVGF 308
Query: 186 NVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIAC 365
NVKNVSVK++RRG V GDSKN+PP G A FTAQVI+LNHPGQIS GY+PVLDCHTAHIAC
Sbjct: 309 NVKNVSVKDIRRGNVCGDSKNDPPMGCASFTAQVIILNHPGQISAGYSPVLDCHTAHIAC 368
Query: 366 KFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPXLGRFAVRDMR 545
KFAE+ EK+DRR+GK E++PK +KSGDA I +VPSKP+CVE+F ++ LGRFAVRDMR
Sbjct: 369 KFAELIEKIDRRSGKKIEESPKFVKSGDACIAKMVPSKPMCVEAFTDYAPLGRFAVRDMR 428
Query: 546 QTVAVGVIKAVNFKEAGGGKVTKAAEKA 629
QTVAVGVIKAV G KVTKAA KA
Sbjct: 429 QTVAVGVIKAVEKVAPGAAKVTKAAVKA 456
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 338 bits (830), Expect = 5e-94
Identities = 155/208 (74%), Positives = 178/208 (85%)
Frame = +3
Query: 6 RDVYKIGGIGTVPVGRVETGILKPGTVVVFAPANITTEVKSVEMHHEALQEAVPGDNVGF 185
+DVYKIGGIGTVPVGRVETG++KPG +V FAPA +TTEVKSVEMHHE+L +PGDNVGF
Sbjct: 249 QDVYKIGGIGTVPVGRVETGVIKPGMIVTFAPAGVTTEVKSVEMHHESLDAGLPGDNVGF 308
Query: 186 NVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIAC 365
NVKNVSVK++RRG V GDSKN+PP G A FTAQVI+LNHPGQIS GY+PVLDCHTAHIAC
Sbjct: 309 NVKNVSVKDIRRGNVCGDSKNDPPMGCASFTAQVIILNHPGQISAGYSPVLDCHTAHIAC 368
Query: 366 KFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPXLGRFAVRDMR 545
KFAE+ EK+DRR+GK E++PK +KSGDA I +VPSKP+CVE+F ++ LGRFAVRDMR
Sbjct: 369 KFAELIEKIDRRSGKKIEESPKFVKSGDACIAKMVPSKPMCVEAFTDYAPLGRFAVRDMR 428
Query: 546 QTVAVGVIKAVNFKEAGGGKVTKAAEKA 629
QTVAVGVIKAV G KVTKAA KA
Sbjct: 429 QTVAVGVIKAVEKVAPGAAKVTKAAVKA 456
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 338 bits (830), Expect = 5e-94
Identities = 155/208 (74%), Positives = 178/208 (85%)
Frame = +3
Query: 6 RDVYKIGGIGTVPVGRVETGILKPGTVVVFAPANITTEVKSVEMHHEALQEAVPGDNVGF 185
+DVYKIGGIGTVPVGRVETG++KPG +V FAPA +TTEVKSVEMHHE+L +PGDNVGF
Sbjct: 249 QDVYKIGGIGTVPVGRVETGVIKPGMIVTFAPAGVTTEVKSVEMHHESLDAGLPGDNVGF 308
Query: 186 NVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIAC 365
NVKNVSVK++RRG V GDSKN+PP G A FTAQVI+LNHPGQIS GY+PVLDCHTAHIAC
Sbjct: 309 NVKNVSVKDIRRGNVCGDSKNDPPMGCASFTAQVIILNHPGQISAGYSPVLDCHTAHIAC 368
Query: 366 KFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPXLGRFAVRDMR 545
KFAE+ EK+DRR+GK E++PK +KSGDA I +VPSKP+CVE+F ++ LGRFAVRDMR
Sbjct: 369 KFAELIEKIDRRSGKKIEESPKFVKSGDACIAKMVPSKPMCVEAFTDYAPLGRFAVRDMR 428
Query: 546 QTVAVGVIKAVNFKEAGGGKVTKAAEKA 629
QTVAVGVIKAV G KVTKAA KA
Sbjct: 429 QTVAVGVIKAVEKVAPGAAKVTKAAVKA 456
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 103 bits (248), Expect = 2e-23
Identities = 60/190 (31%), Positives = 101/190 (53%), Gaps = 2/190 (1%)
Frame = +3
Query: 18 KIGGIGTVPVGRVETGILKPGTVVVFAPANITTEVKSV-EMHHEALQEAVPGDNVGFNVK 194
K +GT+ G++E G +K + V+ P N T EV ++ + E + ++ GD V V+
Sbjct: 476 KYKDLGTILEGKIEAGSIKKNSNVLVMPINQTLEVTAIYDEADEEISSSICGDQVRLRVR 535
Query: 195 NVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFA 374
+++ GYV +KN P F AQ+ +L P ++ GY+ V+ HTA FA
Sbjct: 536 GDD-SDVQTGYVLTSTKN-PVHATTRFIAQIAILELPSILTTGYSCVMHIHTAVEEVSFA 593
Query: 375 EIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPXLGRFAVRDMRQTV 554
++ K+D+ T + ++ P G I L P+C+E F+++ +GRF +RD TV
Sbjct: 594 KLLHKLDK-TNRKSKKPPMFATKGMKIIAELETQTPVCMERFEDYQYMGRFTLRDQGTTV 652
Query: 555 AVG-VIKAVN 581
AVG V+K ++
Sbjct: 653 AVGKVVKILD 662
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 62.5 bits (145), Expect = 5e-11
Identities = 50/189 (26%), Positives = 84/189 (44%), Gaps = 2/189 (1%)
Frame = +3
Query: 9 DVYKIGGIGTVPVGRVETGILKPGTVV--VFAPANITTEVKSVEMHHEALQEAVPGDNVG 182
DV+ I G GTV GRVE G LK G + V +++ T V +EM + L AV GDN G
Sbjct: 259 DVFSISGRGTVVTGRVERGTLKKGAEIEIVGYGSHLKTTVTGIEMFKKQLDAAVAGDNCG 318
Query: 183 FNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIA 362
++++ ++L+RG + P F A +L + T +D + +
Sbjct: 319 LLLRSIKREQLKRGMIVAQPGTVAPH--QKFKASFYILTK--EEGGRRTGFVDKYRPQLY 374
Query: 363 CKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPXLGRFAVRDM 542
+ +++ ++ T D+ K + GD + P+ +E Q RF VR+
Sbjct: 375 SRTSDVTVEL---THPDPNDSDKMVMPGDNVEMICTLIHPIVIEKGQ------RFTVREG 425
Query: 543 RQTVAVGVI 569
TV ++
Sbjct: 426 GSTVGTALV 434
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 58.8 bits (136), Expect = 6e-10
Identities = 56/189 (29%), Positives = 85/189 (44%), Gaps = 1/189 (0%)
Frame = +3
Query: 9 DVYKIGGIGTVPVGRVETGILKPGTVVVFAPANITTEVKSVEMHHEALQE-AVPGDNVGF 185
DVY+ TV GRVE G ++ V+ + VK+V + + AV GD V
Sbjct: 411 DVYRSPRSVTV-TGRVEAGNVQVNQVLYDVSSQEDAYVKNVIRNSDPSSTWAVAGDTVTL 469
Query: 186 NVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIAC 365
+ ++ V +LR G + + +N P R F A++ + G I +G T VL H+
Sbjct: 470 QLADIEVNQLRPGDILSNYEN-PVRRVRSFVAEIQTFDIHGPILSGSTLVL-----HLGR 523
Query: 366 KFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPXLGRFAVRDMR 545
+ K+ K + + S K I L PLC+ +E P LGRF +R
Sbjct: 524 TVTSVSLKIVTVNNKRSR-HIASRKRALVRISFLDGLFPLCLA--EECPALGRFILRRSG 580
Query: 546 QTVAVGVIK 572
TVA G++K
Sbjct: 581 DTVAAGIVK 589
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 31.5 bits (68), Expect = 0.11
Identities = 24/71 (33%), Positives = 38/71 (53%)
Frame = -3
Query: 214 NSLTDTFLTLKPTLSPGTASCRASWCISTDLTSVVMLAGAKTTTVPGFRIPVSTLPTGTV 35
N+ + + T+ + + ASC S + + +SVV+ + +T TV + VST TGTV
Sbjct: 57 NTTSASVQTIAISQTDNAASCIPSASLLS--SSVVLYSAKETVTVSSYWSLVSTSVTGTV 114
Query: 34 PIPPILYTSLV 2
+P YTS V
Sbjct: 115 YVP---YTSSV 122
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 30.7 bits (66), Expect = 0.19
Identities = 53/207 (25%), Positives = 80/207 (38%), Gaps = 7/207 (3%)
Frame = -3
Query: 607 TLPPPASLKFTAFITPTATVCLMSRTAKRPRXGNSWKDSTHRGLEG-TRLTMAASPDLMD 431
T+PP ++ + I PT+T + ++ P S ST G + L+ +P +
Sbjct: 194 TVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPTGGSSSLSTPITPTVPP 253
Query: 430 LGLSSVDLPVRRSTFSLISANLQAMWAVWQSNTGVYPFDI*PG*FSTMTCAVKSAAPLGG 251
SS +P+ ++ S N + S + I P ST T + P
Sbjct: 254 TSTSSTSIPIPPTSTSSTDTNSSPLPTT--STSCTTSTSIPPTGNST-TPVTPTVPPTS- 309
Query: 250 LFFESPAT*PRRNSLTDTFLTLKPTLSPGTASCRASWCI------STDLTSVVMLAGAKT 89
S +T P S + T + P S T SC S I +T +T V +
Sbjct: 310 --TSSTSTPPPPASTSSTGTSSSPLPSTST-SCTTSTSIPPTGNSTTPVTPTVPPTSTSS 366
Query: 88 TTVPGFRIPVSTLPTGTVPIPPILYTS 8
T+ P P ST TGT P+L TS
Sbjct: 367 TSTP--PPPASTSSTGT-SSSPLLSTS 390
>SPAC631.01c |acp2||F-actin capping protein beta subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 268
Score = 27.5 bits (58), Expect = 1.8
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = -3
Query: 457 MAASPDLMDLGLSSVDLPVRRSTFS 383
++ +PDL D+ LSSVD P++ +T S
Sbjct: 27 LSVAPDLADVLLSSVDQPLKVNTCS 51
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 26.2 bits (55), Expect = 4.0
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Frame = -3
Query: 622 SAALVTLPPPASLKFTAFITPTATVCLMSRTAKRPRXGNSWKDSTH--RGLEGTRLTMAA 449
S +VTLPPPAS ++F T T T + S ++ G+ + +++ + ++++
Sbjct: 183 STDIVTLPPPAS-STSSFSTITNTSMIPSSSSFTTTTGSPYYNTSSFLPSSVISSASLSS 241
Query: 448 SPDLMDLGLSSVDLPVRRSTFSLIS 374
S L ++S PV S+ SL S
Sbjct: 242 SSVLPTSIITSTSTPVTVSSSSLSS 266
>SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 505
Score = 26.2 bits (55), Expect = 4.0
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +2
Query: 257 QGSCRLHSASHCAKSPRSNIKRIHTCIGLPHSPHSLQIC-RNQRESRP 397
+GS ++S + +S + I CIG+ SPH +C R Q +P
Sbjct: 90 KGSTCAFTSSILQQIQKSGERSIPKCIGMYTSPHLRSVCERIQLNGKP 137
>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 647
Score = 26.2 bits (55), Expect = 4.0
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +1
Query: 136 CTTRLYKKLYPVTMLVSTSKTYLSRNCAVVTLQEIRKTTHPGEL 267
CT + KL+PV L T + A+ T+ I T PG++
Sbjct: 196 CTMSIEGKLFPVETLFLQKPTENYVDSAIETVININSTYPPGDI 239
>SPAC15E1.05c |||ethanolamine-phosphate cytidylyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 365
Score = 26.2 bits (55), Expect = 4.0
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = -3
Query: 478 LEGTRLTMAASPDLMDLGLSSVDLPVRRSTFSLISANLQAMWAVWQSNTGVYPF 317
LE R ++ +L+D LSSV L + + S++S+ + + + G+ PF
Sbjct: 122 LEVKRTEGVSTTELLDRLLSSVPLEIYSTPVSVLSSQIDLLRRFATDSDGLTPF 175
>SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr
3|||Manual
Length = 396
Score = 26.2 bits (55), Expect = 4.0
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = -3
Query: 442 DLMDLGLSSVDL--PVRRSTFSLISANLQAMWAVWQSNTGVY 323
+L LG++ + P +RST S ++ L W + N GVY
Sbjct: 316 ELSKLGVTIIGSKDPKKRSTHSYVAKILNPEWDAFLKNEGVY 357
>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 709
Score = 25.8 bits (54), Expect = 5.3
Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = -3
Query: 133 STDLTSVVMLAGAKTTTVPGFRIPVSTLPTGT--VPIPPIL 17
++DLT+ L +T+ + + + PT T +PIP +L
Sbjct: 615 NSDLTNSSTLLSPTSTSFTSYTVSATATPTSTSHIPIPTVL 655
>SPBPJ4664.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 163
Score = 25.4 bits (53), Expect = 7.1
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -2
Query: 401 TTVDFLFDFGKFAGYVGCVAIQYRCVSV*YLTWV 300
T +D+LF F+ +G + Y ++V Y+ WV
Sbjct: 73 TLIDYLFFSPPFSLSIGPSLLVYLSIAVSYMLWV 106
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 25.4 bits (53), Expect = 7.1
Identities = 12/45 (26%), Positives = 21/45 (46%)
Frame = -3
Query: 637 PLVAFSAALVTLPPPASLKFTAFITPTATVCLMSRTAKRPRXGNS 503
P + ++ T+PP S+ T + PT ++ + TA NS
Sbjct: 73 PSTSHNSTTTTVPPTTSMNTTTTVPPTTSLNTTTTTAPPTTHVNS 117
>SPBC19C2.09 |sre1||sterol regulatory element binding protein
Sre1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 900
Score = 25.0 bits (52), Expect = 9.3
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -3
Query: 598 PPASLKFTAFITPTATVCLMSRTAKRPRXGNSWKDS 491
P LK ITP T C +AK+ + S +DS
Sbjct: 191 PEVKLKTEEIITPMDTTCKPEPSAKKIKLSPSSEDS 226
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 25.0 bits (52), Expect = 9.3
Identities = 15/68 (22%), Positives = 33/68 (48%)
Frame = +1
Query: 166 PVTMLVSTSKTYLSRNCAVVTLQEIRKTTHPGELQTSQRKSLC*ITQVKYQTDTHLYWIA 345
P + +++ S + S + +VT ++ TTH +++T + T + D+H +
Sbjct: 379 PTSSILTNSGSIKSGDHQIVTTSFVQTTTHGSQVETLTYVTTLTETILTTTYDSHTFLTT 438
Query: 346 TQPT*PAN 369
P+ P+N
Sbjct: 439 ITPS-PSN 445
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,893,168
Number of Sequences: 5004
Number of extensions: 62209
Number of successful extensions: 187
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -