Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_M24
(645 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 344 4e-95
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 344 4e-95
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 344 4e-95
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 101 6e-22
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 54 7e-08
L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding pro... 53 2e-07
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 52 3e-07
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 52 3e-07
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 50 2e-06
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 50 2e-06
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 50 2e-06
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 38 0.008
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 38 0.008
Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical pr... 37 0.014
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 31 0.53
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 31 0.53
Z81076-4|CAB03053.1| 172|Caenorhabditis elegans Hypothetical pr... 31 0.70
U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-... 31 0.70
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-... 31 0.70
U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore co... 30 1.2
U13614-1|AAA21347.1| 399|Caenorhabditis elegans protein ( Caeno... 30 1.2
Z71265-6|CAA95837.1| 399|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z71258-17|CAA95787.1| 399|Caenorhabditis elegans Hypothetical p... 30 1.6
U88170-4|AAB42245.2| 425|Caenorhabditis elegans Hypothetical pr... 30 1.6
U30248-1|AAC13874.1| 399|Caenorhabditis elegans transcription f... 30 1.6
AF039711-8|ABS19466.1| 766|Caenorhabditis elegans Hypothetical ... 29 2.1
U53154-3|AAC25852.1| 346|Caenorhabditis elegans Hypothetical pr... 29 2.8
Z81097-12|CAD56590.1| 457|Caenorhabditis elegans Hypothetical p... 29 3.7
AC006816-6|ABA00154.1| 506|Caenorhabditis elegans Hypothetical ... 29 3.7
U41007-15|AAQ01538.1| 564|Caenorhabditis elegans Kinesin-like p... 28 4.9
U41007-14|AAA82277.1| 690|Caenorhabditis elegans Kinesin-like p... 28 4.9
AB023577-1|BAB82459.1| 690|Caenorhabditis elegans Kinesin like ... 28 4.9
U58740-1|AAB00611.1| 1073|Caenorhabditis elegans Hypothetical pr... 28 6.5
Z70208-11|CAA94144.1| 598|Caenorhabditis elegans Hypothetical p... 27 8.6
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 344 bits (845), Expect = 4e-95
Identities = 161/213 (75%), Positives = 181/213 (84%)
Frame = +3
Query: 6 RDVYKIGGIGTVPVGRVETGILKPGTVVVFAPANITTEVKSVEMHHEALQEAVPGDNVGF 185
+DVYKIGGIGTVPVGRVETGI+KPG VV FAP N+TTEVKSVEMHHE+L EAVPGDNVGF
Sbjct: 217 QDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPQNVTTEVKSVEMHHESLPEAVPGDNVGF 276
Query: 186 NVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIAC 365
NVKNVSVK++RRG V DSK +P + A F AQVI++NHPGQISNGYTPVLDCHTAHIAC
Sbjct: 277 NVKNVSVKDIRRGSVCSDSKQDPAKEARTFHAQVIIMNHPGQISNGYTPVLDCHTAHIAC 336
Query: 366 KFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPXLGRFAVRDMR 545
KF E+KEKVDRRTGK ED PK +KSGDA IV L+P+KPLCVESF ++ LGRFAVRDMR
Sbjct: 337 KFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAPLGRFAVRDMR 396
Query: 546 QTVAVGVIKAVNFKEAGGGKVTKAAEKATNGKK 644
QTVAVGVIK+V + GKVTK+A+KA KK
Sbjct: 397 QTVAVGVIKSVEKSDGSSGKVTKSAQKAAPKKK 429
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 344 bits (845), Expect = 4e-95
Identities = 161/213 (75%), Positives = 181/213 (84%)
Frame = +3
Query: 6 RDVYKIGGIGTVPVGRVETGILKPGTVVVFAPANITTEVKSVEMHHEALQEAVPGDNVGF 185
+DVYKIGGIGTVPVGRVETGI+KPG VV FAP N+TTEVKSVEMHHE+L EAVPGDNVGF
Sbjct: 251 QDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPQNVTTEVKSVEMHHESLPEAVPGDNVGF 310
Query: 186 NVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIAC 365
NVKNVSVK++RRG V DSK +P + A F AQVI++NHPGQISNGYTPVLDCHTAHIAC
Sbjct: 311 NVKNVSVKDIRRGSVCSDSKQDPAKEARTFHAQVIIMNHPGQISNGYTPVLDCHTAHIAC 370
Query: 366 KFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPXLGRFAVRDMR 545
KF E+KEKVDRRTGK ED PK +KSGDA IV L+P+KPLCVESF ++ LGRFAVRDMR
Sbjct: 371 KFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAPLGRFAVRDMR 430
Query: 546 QTVAVGVIKAVNFKEAGGGKVTKAAEKATNGKK 644
QTVAVGVIK+V + GKVTK+A+KA KK
Sbjct: 431 QTVAVGVIKSVEKSDGSSGKVTKSAQKAAPKKK 463
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 344 bits (845), Expect = 4e-95
Identities = 161/213 (75%), Positives = 181/213 (84%)
Frame = +3
Query: 6 RDVYKIGGIGTVPVGRVETGILKPGTVVVFAPANITTEVKSVEMHHEALQEAVPGDNVGF 185
+DVYKIGGIGTVPVGRVETGI+KPG VV FAP N+TTEVKSVEMHHE+L EAVPGDNVGF
Sbjct: 251 QDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPQNVTTEVKSVEMHHESLPEAVPGDNVGF 310
Query: 186 NVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIAC 365
NVKNVSVK++RRG V DSK +P + A F AQVI++NHPGQISNGYTPVLDCHTAHIAC
Sbjct: 311 NVKNVSVKDIRRGSVCSDSKQDPAKEARTFHAQVIIMNHPGQISNGYTPVLDCHTAHIAC 370
Query: 366 KFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPXLGRFAVRDMR 545
KF E+KEKVDRRTGK ED PK +KSGDA IV L+P+KPLCVESF ++ LGRFAVRDMR
Sbjct: 371 KFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAPLGRFAVRDMR 430
Query: 546 QTVAVGVIKAVNFKEAGGGKVTKAAEKATNGKK 644
QTVAVGVIK+V + GKVTK+A+KA KK
Sbjct: 431 QTVAVGVIKSVEKSDGSSGKVTKSAQKAAPKKK 463
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 101 bits (241), Expect = 6e-22
Identities = 57/188 (30%), Positives = 99/188 (52%), Gaps = 1/188 (0%)
Frame = +3
Query: 18 KIGGIGTVPVGRVETGILKPGTVVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKN 197
K +GTV +G++E+G ++ G +V P +V + + V GDN+ F +K
Sbjct: 347 KYSEMGTVIIGKMESGCVQKGDTLVVMPNKQPVQVLQIWADDVETERVVAGDNIKFKLKG 406
Query: 198 VSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAE 377
+ EL+ G++ + G F A+V+VL H I++GY+ VL +A
Sbjct: 407 IEENELQGGFIICSPDSLAKTGRV-FDAEVLVLEHRSIIASGYSCVLHIQSAVEEVTVKG 465
Query: 378 IKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPXLGRFAVRDMRQTVA 557
+ +D++TG+ + K +K + I+ L +P +E F+E+P LGRF +RD +T+A
Sbjct: 466 VIATIDKKTGE--KKRAKFVKQDEKCIMRLESPEPFVLEPFKEYPYLGRFTLRDEGKTIA 523
Query: 558 VG-VIKAV 578
+G V+K V
Sbjct: 524 IGKVLKVV 531
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 54.4 bits (125), Expect = 7e-08
Identities = 33/137 (24%), Positives = 64/137 (46%), Gaps = 4/137 (2%)
Frame = +3
Query: 9 DVYKIGGIGTVPVGRVETGILKPGTVVVFAPAN----ITTEVKSVEMHHEALQEAVPGDN 176
D+Y + G+GT+ G + +G ++ +++ P + + +KS+ + G +
Sbjct: 379 DIYWVDGVGTIASGTLLSGTIRLNDILLLGPTSNGDFMPIPIKSIHRKRMPVGIVKCGQS 438
Query: 177 VGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAH 356
F +K + K++R+G V D K P F A+++VL+HP I Y +L +
Sbjct: 439 ASFALKKIPKKDVRKGMVLVDPKVKPVASMV-FEAEILVLHHPTTIKPNYQAMLHIGSVR 497
Query: 357 IACKFAEIKEKVDRRTG 407
+ ++V RTG
Sbjct: 498 QTATLVSMGKEV-LRTG 513
>L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding
protein protein.
Length = 593
Score = 52.8 bits (121), Expect = 2e-07
Identities = 29/114 (25%), Positives = 56/114 (49%), Gaps = 4/114 (3%)
Frame = +3
Query: 9 DVYKIGGIGTVPVGRVETGILKPGTVVVFAPAN----ITTEVKSVEMHHEALQEAVPGDN 176
D+Y + G+GT+ G + +G ++ +++ P + + +KS+ + G +
Sbjct: 380 DIYWVDGVGTIASGTLLSGTIRLNDILLLGPTSNGDFMPIPIKSIHRKRCLVGIVKCGQS 439
Query: 177 VGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVL 338
F +K + K++R+G V D K P F A+++VL+HP I Y +L
Sbjct: 440 ASFALKKIPKKDVRQGMVLVDPKVKPVASMV-FEAEILVLHHPTTIKPNYQAML 492
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 52.4 bits (120), Expect = 3e-07
Identities = 38/191 (19%), Positives = 79/191 (41%), Gaps = 1/191 (0%)
Frame = +3
Query: 9 DVYKIGGIGTVPVGRVETGILKPGTVVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFN 188
DV K+ V G++E+G ++ V + VK +++ + GD +
Sbjct: 399 DVLKVASNQLVVSGKIESGEVEKDDKVYIMSSVTAATVKECA-NNDGSRHCFAGDYILLT 457
Query: 189 VKNVSVKE-LRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIAC 365
++ E ++ G V + + + F +++ I G L H+ + C
Sbjct: 458 LQGTFEPESIQTGSVVVRAGPDTLIPSKKFEVRLVAFEIAMPIIKGAKAELYAHSLCVPC 517
Query: 366 KFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPXLGRFAVRDMR 545
F + +++ G+ + P+ I G +A+V + + +E+F LGR R
Sbjct: 518 TFTNLLYTINKSNGEILKKGPRFIAKGASAVVEIETEYDIAIETFTSCRALGRVTFRAGG 577
Query: 546 QTVAVGVIKAV 578
T+A G+++ V
Sbjct: 578 NTIAAGIVEKV 588
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 52.4 bits (120), Expect = 3e-07
Identities = 38/191 (19%), Positives = 79/191 (41%), Gaps = 1/191 (0%)
Frame = +3
Query: 9 DVYKIGGIGTVPVGRVETGILKPGTVVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFN 188
DV K+ V G++E+G ++ V + VK +++ + GD +
Sbjct: 417 DVLKVASNQLVVSGKIESGEVEKDDKVYIMSSVTAATVKECA-NNDGSRHCFAGDYILLT 475
Query: 189 VKNVSVKE-LRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIAC 365
++ E ++ G V + + + F +++ I G L H+ + C
Sbjct: 476 LQGTFEPESIQTGSVVVRAGPDTLIPSKKFEVRLVAFEIAMPIIKGAKAELYAHSLCVPC 535
Query: 366 KFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPXLGRFAVRDMR 545
F + +++ G+ + P+ I G +A+V + + +E+F LGR R
Sbjct: 536 TFTNLLYTINKSNGEILKKGPRFIAKGASAVVEIETEYDIAIETFTSCRALGRVTFRAGG 595
Query: 546 QTVAVGVIKAV 578
T+A G+++ V
Sbjct: 596 NTIAAGIVEKV 606
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 49.6 bits (113), Expect = 2e-06
Identities = 54/194 (27%), Positives = 85/194 (43%), Gaps = 5/194 (2%)
Frame = +3
Query: 12 VYKIGGIGTVPVGRVETGILKPGTVV-VFAPANITTEVKSV----EMHHEALQEAVPGDN 176
VY I G GTV G++E GILK G + + T VKSV E + + +A PGD
Sbjct: 259 VYSIVGRGTVITGKLERGILKRGDKIEIVGGTKDGTTVKSVISGLESFRKTVDQAEPGDQ 318
Query: 177 VGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAH 356
+G ++ + K++RRG V + + + AQ+ VL TP+ + + H
Sbjct: 319 LGVLLRGLGPKDVRRGCVL-LPQGHKHKVTDKVKAQLYVLKE--SEGGAKTPIANYFSEH 375
Query: 357 IACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPXLGRFAVR 536
+ + V R GK + G++A V L + + +E Q RF +R
Sbjct: 376 VFSLTWDSGASV-RIIGKD------FVMPGESAEVELSLNSQMFIEPQQ------RFTIR 422
Query: 537 DMRQTVAVGVIKAV 578
+T+ GV V
Sbjct: 423 KGAKTIGTGVFTDV 436
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 49.6 bits (113), Expect = 2e-06
Identities = 54/194 (27%), Positives = 85/194 (43%), Gaps = 5/194 (2%)
Frame = +3
Query: 12 VYKIGGIGTVPVGRVETGILKPGTVV-VFAPANITTEVKSV----EMHHEALQEAVPGDN 176
VY I G GTV G++E GILK G + + T VKSV E + + +A PGD
Sbjct: 260 VYSIVGRGTVITGKLERGILKRGDKIEIVGGTKDGTTVKSVISGLESFRKTVDQAEPGDQ 319
Query: 177 VGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAH 356
+G ++ + K++RRG V + + + AQ+ VL TP+ + + H
Sbjct: 320 LGVLLRGLGPKDVRRGCVL-LPQGHKHKVTDKVKAQLYVLKE--SEGGAKTPIANYFSEH 376
Query: 357 IACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPXLGRFAVR 536
+ + V R GK + G++A V L + + +E Q RF +R
Sbjct: 377 VFSLTWDSGASV-RIIGKD------FVMPGESAEVELSLNSQMFIEPQQ------RFTIR 423
Query: 537 DMRQTVAVGVIKAV 578
+T+ GV V
Sbjct: 424 KGAKTIGTGVFTDV 437
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 49.6 bits (113), Expect = 2e-06
Identities = 54/194 (27%), Positives = 85/194 (43%), Gaps = 5/194 (2%)
Frame = +3
Query: 12 VYKIGGIGTVPVGRVETGILKPGTVV-VFAPANITTEVKSV----EMHHEALQEAVPGDN 176
VY I G GTV G++E GILK G + + T VKSV E + + +A PGD
Sbjct: 260 VYSIVGRGTVITGKLERGILKRGDKIEIVGGTKDGTTVKSVISGLESFRKTVDQAEPGDQ 319
Query: 177 VGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAH 356
+G ++ + K++RRG V + + + AQ+ VL TP+ + + H
Sbjct: 320 LGVLLRGLGPKDVRRGCVL-LPQGHKHKVTDKVKAQLYVLKE--SEGGAKTPIANYFSEH 376
Query: 357 IACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPXLGRFAVR 536
+ + V R GK + G++A V L + + +E Q RF +R
Sbjct: 377 VFSLTWDSGASV-RIIGKD------FVMPGESAEVELSLNSQMFIEPQQ------RFTIR 423
Query: 537 DMRQTVAVGVIKAV 578
+T+ GV V
Sbjct: 424 KGAKTIGTGVFTDV 437
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 37.5 bits (83), Expect = 0.008
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Frame = +3
Query: 21 IGGIGTVPVGRVETGILKPGTVVVFA--PANITTEVKSVEMHHEALQEAVPGDNVGFNVK 194
I G GTV VG +E G+LK G V + T +++ ++++E GD+ G +
Sbjct: 250 ITGRGTVIVGTLERGVLKKGDKVEIKGDGQTLQTTASDIQVFGKSVKEVRAGDHCGVLCR 309
Query: 195 NVSVKELRRGYVAG 236
V ++RG AG
Sbjct: 310 GVKGDTVKRGMWAG 323
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 37.5 bits (83), Expect = 0.008
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Frame = +3
Query: 21 IGGIGTVPVGRVETGILKPGTVVVFA--PANITTEVKSVEMHHEALQEAVPGDNVGFNVK 194
I G GTV VG +E G+LK G V + T +++ ++++E GD+ G +
Sbjct: 250 ITGRGTVIVGTLERGVLKKGDKVEIKGDGQTLQTTASDIQVFGKSVKEVRAGDHCGVLCR 309
Query: 195 NVSVKELRRGYVAG 236
V ++RG AG
Sbjct: 310 GVKGDTVKRGMWAG 323
>Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical
protein T04H1.2 protein.
Length = 588
Score = 36.7 bits (81), Expect = 0.014
Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 4/102 (3%)
Frame = +3
Query: 9 DVYKIGGIGTVPVGRVETGILKPGTVVVFAPANITT----EVKSVEMHHEALQEAVPGDN 176
++Y + +G V G + G L G V+ P T V S+ +A+ PG+
Sbjct: 409 ELYNVPHVGQVVGGMLSEGQLHEGADVLVGPMKDGTFEKITVGSIRRSRQAVGCVNPGEA 468
Query: 177 VGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNH 302
++ LRRG V + + PP +FTA +++L H
Sbjct: 469 ASISLNLPDGVSLRRGMVLAEIDHQPP-VCYEFTANLLLLCH 509
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 31.5 bits (68), Expect = 0.53
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = +3
Query: 15 YKIGGIGTVPVGRVETGILKPGTVVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNV 191
+ I G GTV G V G+L+ T + F N VK++E + + + G F V
Sbjct: 210 FAIKGQGTVLTGTVIRGVLRLNTEIEFPALNEKRRVKTLETWKQRVGQVAAGARAAFLV 268
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 31.5 bits (68), Expect = 0.53
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = +3
Query: 15 YKIGGIGTVPVGRVETGILKPGTVVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNV 191
+ I G GTV G V G+L+ T + F N VK++E + + + G F V
Sbjct: 169 FAIKGQGTVLTGTVIRGVLRLNTEIEFPALNEKRRVKTLETWKQRVGQVAAGARAAFLV 227
>Z81076-4|CAB03053.1| 172|Caenorhabditis elegans Hypothetical
protein F35C5.4 protein.
Length = 172
Score = 31.1 bits (67), Expect = 0.70
Identities = 27/97 (27%), Positives = 39/97 (40%), Gaps = 3/97 (3%)
Frame = -3
Query: 295 STMTCAVKSAAPLGGLFFESPAT*PRRNSLTDTFLTLKPTLSPG-TASCRASWCISTDLT 119
ST T A+ + P ++ P + T +S + S R S +S D T
Sbjct: 4 STATVAIIQSEPSTSSSSSPSSSRPEDGATVGNTFTQSSAVSESQSTSERTSRSVSPDST 63
Query: 118 SVVMLAGAKTTTVPGFR--IPVSTLPTGTVPIPPILY 14
V + +TVP + VST PT +PPI Y
Sbjct: 64 PVRVTTSTLLSTVPTSQDISGVSTAPTTKATLPPITY 100
>U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform b protein.
Length = 1169
Score = 31.1 bits (67), Expect = 0.70
Identities = 19/54 (35%), Positives = 27/54 (50%)
Frame = -3
Query: 166 GTASCRASWCISTDLTSVVMLAGAKTTTVPGFRIPVSTLPTGTVPIPPILYTSL 5
G + CR WCI D S+++ G + P +P T P VP+PP L S+
Sbjct: 546 GGSVCREGWCICPD-PSMIVNRGICIQSGPKPTLPPRT-PIPQVPLPPQLPISV 597
>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform a protein.
Length = 1876
Score = 31.1 bits (67), Expect = 0.70
Identities = 19/54 (35%), Positives = 27/54 (50%)
Frame = -3
Query: 166 GTASCRASWCISTDLTSVVMLAGAKTTTVPGFRIPVSTLPTGTVPIPPILYTSL 5
G + CR WCI D S+++ G + P +P T P VP+PP L S+
Sbjct: 643 GGSVCREGWCICPD-PSMIVNRGICIQSGPKPTLPPRT-PIPQVPLPPQLPISV 694
>U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore
complex protein protein11 protein.
Length = 805
Score = 30.3 bits (65), Expect = 1.2
Identities = 23/81 (28%), Positives = 32/81 (39%)
Frame = -3
Query: 286 TCAVKSAAPLGGLFFESPAT*PRRNSLTDTFLTLKPTLSPGTASCRASWCISTDLTSVVM 107
T A +AAP GGLF + T P T T +P TA+ + T +
Sbjct: 468 TTAPAAAAPTGGLFGAATTTAPATVGPTGGLFGAATTTTPATAATLGQTPSTVSATPSLP 527
Query: 106 LAGAKTTTVPGFRIPVSTLPT 44
+ T+T+P P PT
Sbjct: 528 TTTSTTSTLPK---PAEATPT 545
Score = 29.5 bits (63), Expect = 2.1
Identities = 24/93 (25%), Positives = 35/93 (37%), Gaps = 3/93 (3%)
Frame = -3
Query: 295 STMTCAVKSAAPLGGLFFESPAT*PRRNSLTDTFLTLKPTLSPGTASCRAS--WCISTDL 122
++ T S AP GGLF + T P + T T +P T +T
Sbjct: 447 ASSTTTPASTAPTGGLFGAATTTAPAAAAPTGGLFGAATTTAPATVGPTGGLFGAATTTT 506
Query: 121 TSVVMLAGAKTTTVPGF-RIPVSTLPTGTVPIP 26
+ G +TV +P +T T T+P P
Sbjct: 507 PATAATLGQTPSTVSATPSLPTTTSTTSTLPKP 539
Score = 27.5 bits (58), Expect = 8.6
Identities = 30/94 (31%), Positives = 33/94 (35%), Gaps = 9/94 (9%)
Frame = -3
Query: 304 G*FSTMTCAVKSAAPLGGLFFESPAT---*PRRNSL------TDTFLTLKPTLSPGTASC 152
G F + T A AAP GLF S T P SL T T + P S G
Sbjct: 387 GLFGSSTPAKTPAAPTAGLFGASSTTTTSAPATGSLFGTAPATTTATSAAPAASTGGLFG 446
Query: 151 RASWCISTDLTSVVMLAGAKTTTVPGFRIPVSTL 50
+S L GA TTT P P L
Sbjct: 447 ASSTTTPASTAPTGGLFGAATTTAPAAAAPTGGL 480
>U13614-1|AAA21347.1| 399|Caenorhabditis elegans protein (
Caenorhabditis elegansN2 basic-helix-loop-helix
transcription factor E12/47homolog mRNA, complete cds.
).
Length = 399
Score = 30.3 bits (65), Expect = 1.2
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Frame = -3
Query: 238 SPAT*PRRNSLTDTFLTLKPTLSPGTASCRASWCIS----TDLTSVVMLAGAKTT---TV 80
+P+T P S TD L LKPT +P T S S ++ T+LT+ + + T T
Sbjct: 105 APSTAPAPTSTTDV-LELKPTTAPATNSAETSAIVAPQPLTNLTAPIDAXSSMYTWPQTY 163
Query: 79 PGFRIP 62
PG+ P
Sbjct: 164 PGYLPP 169
>Z71265-6|CAA95837.1| 399|Caenorhabditis elegans Hypothetical
protein M05B5.5a protein.
Length = 399
Score = 29.9 bits (64), Expect = 1.6
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Frame = -3
Query: 238 SPAT*PRRNSLTDTFLTLKPTLSPGTASCRASWCIS----TDLTSVVMLAGAKTT---TV 80
+P+T P S TD L LKPT +P T S S ++ T+LT+ + + T T
Sbjct: 105 APSTAPAPTSTTDV-LELKPTTAPATNSAETSAIVAPQPLTNLTAPIDAMSSMYTWPQTY 163
Query: 79 PGFRIP 62
PG+ P
Sbjct: 164 PGYLPP 169
>Z71258-17|CAA95787.1| 399|Caenorhabditis elegans Hypothetical
protein M05B5.5a protein.
Length = 399
Score = 29.9 bits (64), Expect = 1.6
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Frame = -3
Query: 238 SPAT*PRRNSLTDTFLTLKPTLSPGTASCRASWCIS----TDLTSVVMLAGAKTT---TV 80
+P+T P S TD L LKPT +P T S S ++ T+LT+ + + T T
Sbjct: 105 APSTAPAPTSTTDV-LELKPTTAPATNSAETSAIVAPQPLTNLTAPIDAMSSMYTWPQTY 163
Query: 79 PGFRIP 62
PG+ P
Sbjct: 164 PGYLPP 169
>U88170-4|AAB42245.2| 425|Caenorhabditis elegans Hypothetical
protein C10G11.6 protein.
Length = 425
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = +2
Query: 338 GLPHSPHSLQICRNQRESRPSYW*INR 418
GL HSPHS N R S P ++ INR
Sbjct: 47 GLVHSPHSSFTTENLRSSDPMFFDINR 73
>U30248-1|AAC13874.1| 399|Caenorhabditis elegans transcription
factor E12/47 homolog protein.
Length = 399
Score = 29.9 bits (64), Expect = 1.6
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Frame = -3
Query: 238 SPAT*PRRNSLTDTFLTLKPTLSPGTASCRASWCIS----TDLTSVVMLAGAKTT---TV 80
+P+T P S TD L LKPT +P T S S ++ T+LT+ + + T T
Sbjct: 105 APSTAPAPTSTTDV-LELKPTTAPATNSAETSAIVAPQPLTNLTAPIDAMSSMYTWPQTY 163
Query: 79 PGFRIP 62
PG+ P
Sbjct: 164 PGYLPP 169
>AF039711-8|ABS19466.1| 766|Caenorhabditis elegans Hypothetical
protein F49D11.10 protein.
Length = 766
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +3
Query: 72 KPGTVVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKN 197
KPGT+ F P ITTE K H L+ + GD +++
Sbjct: 360 KPGTIQWFDPVTITTESKM----HVTLENTIDGDMTSRGIRS 397
>U53154-3|AAC25852.1| 346|Caenorhabditis elegans Hypothetical
protein C33G8.8 protein.
Length = 346
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Frame = -3
Query: 154 CRASWCISTDLTSVVMLAGAKTTTV----PGFRIPVSTLPTGTVP 32
CR CI+T +T + + V PG+ +STLPT +P
Sbjct: 55 CRMEKCIATGMTMCKVQGNREKNKVRGYYPGYLPVISTLPTSVIP 99
>Z81097-12|CAD56590.1| 457|Caenorhabditis elegans Hypothetical
protein K07A1.9b protein.
Length = 457
Score = 28.7 bits (61), Expect = 3.7
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -1
Query: 546 ASCHARRNDRGXGIPGRTPHTGAW 475
+SC +NDRG P R+ +GAW
Sbjct: 15 SSCGYCKNDRGERTPARSAKSGAW 38
>AC006816-6|ABA00154.1| 506|Caenorhabditis elegans Hypothetical
protein Y71D11A.1 protein.
Length = 506
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +1
Query: 370 LPKSKRKSTVVLVNQQRTTLNPLNLVMPPLSTWFPP 477
LPK+ T V + TT+ P +PP +T PP
Sbjct: 264 LPKTTVAPTTTTVPRTTTTVPPTTTTVPPTTTTVPP 299
>U41007-15|AAQ01538.1| 564|Caenorhabditis elegans Kinesin-like
protein protein 10,isoform b protein.
Length = 564
Score = 28.3 bits (60), Expect = 4.9
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +3
Query: 336 LDCHTAHIACKFAEIKEKVDRRTGKSTE 419
L C + C+ + +K+K + T KSTE
Sbjct: 457 LQCQNEKLCCELSSLKDKHEEATSKSTE 484
>U41007-14|AAA82277.1| 690|Caenorhabditis elegans Kinesin-like
protein protein 10,isoform a protein.
Length = 690
Score = 28.3 bits (60), Expect = 4.9
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +3
Query: 336 LDCHTAHIACKFAEIKEKVDRRTGKSTE 419
L C + C+ + +K+K + T KSTE
Sbjct: 457 LQCQNEKLCCELSSLKDKHEEATSKSTE 484
>AB023577-1|BAB82459.1| 690|Caenorhabditis elegans Kinesin like
protein protein.
Length = 690
Score = 28.3 bits (60), Expect = 4.9
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +3
Query: 336 LDCHTAHIACKFAEIKEKVDRRTGKSTE 419
L C + C+ + +K+K + T KSTE
Sbjct: 457 LQCQNEKLCCELSSLKDKHEEATSKSTE 484
>U58740-1|AAB00611.1| 1073|Caenorhabditis elegans Hypothetical
protein R09H3.1 protein.
Length = 1073
Score = 27.9 bits (59), Expect = 6.5
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = +2
Query: 68 PKAWYCCRFCP 100
P W CCRFCP
Sbjct: 872 PPQWECCRFCP 882
>Z70208-11|CAA94144.1| 598|Caenorhabditis elegans Hypothetical
protein F54B11.11 protein.
Length = 598
Score = 27.5 bits (58), Expect = 8.6
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Frame = -3
Query: 190 TLKPTLSPGTASCRASWCISTDLTSV---VMLAGAKTTTVPGFRIPVSTLPTGTVPIPPI 20
T +P LS T+S + +T +T+ ++ A TTT P P +T T PP+
Sbjct: 471 TTQPILSTMTSSTTKTLTSTTTITTTKANILTTTATTTTPPVTSAPATTFITPVPFTPPV 530
Query: 19 LYTSLV 2
++ +
Sbjct: 531 TNSTTI 536
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,609,571
Number of Sequences: 27780
Number of extensions: 388903
Number of successful extensions: 1251
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 1155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1243
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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