Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_M24
         (645 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...   394   e-112
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...   384   e-109
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...   235   2e-64
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...   161   7e-42
DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.              31   0.010
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    26   0.27 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   1.4  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    23   3.3  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   4.4  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   5.8  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    22   5.8  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   7.7  

>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score =  394 bits (969), Expect = e-112
 Identities = 188/212 (88%), Positives = 198/212 (93%)
 Frame = +3

Query: 6   RDVYKIGGIGTVPVGRVETGILKPGTVVVFAPANITTEVKSVEMHHEALQEAVPGDNVGF 185
           +DVYKIGGIGTVPVGRVETG+LKPG VV FAPA +TTEVKSVEMHHEALQEAVPGDNVGF
Sbjct: 251 QDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPAGLTTEVKSVEMHHEALQEAVPGDNVGF 310

Query: 186 NVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIAC 365
           NVKNVSVKELRRGYVAGDSKNNPP+GAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIAC
Sbjct: 311 NVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIAC 370

Query: 366 KFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPXLGRFAVRDMR 545
           KFA+IKEK DRR GK+TE+NPKSIKSGDAAIV LVPSKP+C E+FQEFP LGRFAVRDMR
Sbjct: 371 KFADIKEKCDRRNGKTTEENPKSIKSGDAAIVMLVPSKPMCAEAFQEFPPLGRFAVRDMR 430

Query: 546 QTVAVGVIKAVNFKEAGGGKVTKAAEKATNGK 641
           QTVAVGVIKAV FK+A  GKVTKAAEKA   K
Sbjct: 431 QTVAVGVIKAVTFKDA-AGKVTKAAEKAQKKK 461


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score =  384 bits (946), Expect = e-109
 Identities = 184/212 (86%), Positives = 196/212 (92%)
 Frame = +3

Query: 6   RDVYKIGGIGTVPVGRVETGILKPGTVVVFAPANITTEVKSVEMHHEALQEAVPGDNVGF 185
           +DVYKIGGIGTVPVGRVETGILKPG +V FAPA +TTEVKSVEMHHEAL EA+PGDNVGF
Sbjct: 251 QDVYKIGGIGTVPVGRVETGILKPGMLVTFAPAALTTEVKSVEMHHEALTEALPGDNVGF 310

Query: 186 NVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIAC 365
           NVKN+SVKELRRGYVAGDSKN PPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIAC
Sbjct: 311 NVKNISVKELRRGYVAGDSKNQPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIAC 370

Query: 366 KFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPXLGRFAVRDMR 545
           KFAEIKEK DRRTGK+TE+NPKSIKSGDAAIV L P+KP+CVE+FQEFP LGRFAVRDMR
Sbjct: 371 KFAEIKEKCDRRTGKTTEENPKSIKSGDAAIVMLQPTKPMCVEAFQEFPPLGRFAVRDMR 430

Query: 546 QTVAVGVIKAVNFKEAGGGKVTKAAEKATNGK 641
           QTVAVGVIK+V FK+   GKVTKAAEKA   K
Sbjct: 431 QTVAVGVIKSVTFKDT-QGKVTKAAEKAQKKK 461



 Score = 21.4 bits (43), Expect = 7.7
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -3

Query: 175 LSPGTASCRASWCISTDLTSVVMLAGAKTTTVPG 74
           L PG     A   ++T++ SV M   A T  +PG
Sbjct: 272 LKPGMLVTFAPAALTTEVKSVEMHHEALTEALPG 305


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score =  235 bits (576), Expect = 2e-64
 Identities = 109/119 (91%), Positives = 114/119 (95%)
 Frame = +3

Query: 123 KSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNH 302
           KSVEMHHEAL EA+PGDNVGFNVKN+SVKELRRGYVAGDSKN PPRGAADFTAQVIVLNH
Sbjct: 1   KSVEMHHEALTEALPGDNVGFNVKNISVKELRRGYVAGDSKNQPPRGAADFTAQVIVLNH 60

Query: 303 PGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSK 479
           PGQISNGYTPVLDCHTAHIACKFAEIKEK DRRTGK+TE+NPKSIKSGDAAIV L P+K
Sbjct: 61  PGQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKSIKSGDAAIVMLQPTK 119


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score =  161 bits (390), Expect = 7e-42
 Identities = 75/81 (92%), Positives = 78/81 (96%)
 Frame = +3

Query: 6   RDVYKIGGIGTVPVGRVETGILKPGTVVVFAPANITTEVKSVEMHHEALQEAVPGDNVGF 185
           +DVYKIGGIGTVPVGRVETG+LKPG VV FAPA +TTEVKSVEMHHEALQEAVPGDNVGF
Sbjct: 194 QDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPAGLTTEVKSVEMHHEALQEAVPGDNVGF 253

Query: 186 NVKNVSVKELRRGYVAGDSKN 248
           NVKNVSVKELRRGYVAGDSKN
Sbjct: 254 NVKNVSVKELRRGYVAGDSKN 274


>DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.
          Length = 135

 Score = 31.1 bits (67), Expect = 0.010
 Identities = 21/71 (29%), Positives = 34/71 (47%)
 Frame = +3

Query: 3   TRDVYKIGGIGTVPVGRVETGILKPGTVVVFAPANITTEVKSVEMHHEALQEAVPGDNVG 182
           T + ++IG    VP+ R+ET I        F   NI  E + V++  E L +   G + G
Sbjct: 18  TLEEFQIGLRAVVPICRIETSI-DQQKEDDFRDGNIDVEDEKVQLFSECLIKKFNGYDDG 76

Query: 183 FNVKNVSVKEL 215
            N   V ++E+
Sbjct: 77  GNFNEVVIREI 87


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 26.2 bits (55), Expect = 0.27
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 554 RRRCNKGCELQGSRWWQSHQSC 619
           R RC+   ++ GS+ WQ  +SC
Sbjct: 54  RGRCSSYLQVSGSKIWQMERSC 75


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +2

Query: 245  KQPTQGSCRLHSASHCAKSPRSNIKRIHTCIGLPHSP 355
            K  TQ S  + + +     P S  +R HT  G+P  P
Sbjct: 1048 KTYTQYSVVVQAFNKVGSGPMSEERRQHTAEGVPEQP 1084


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = -2

Query: 578 HSLYYTDGDRLPHVTHGETTEGWEFLEG-LHTQGLGGNQVDNG 453
           H LYY D ++  +  + E    +E  +  L+TQ  G     NG
Sbjct: 276 HGLYYVDTEQFSNPQYEENNVQYEGSQDILNTQSFGKVVSKNG 318


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/39 (20%), Positives = 20/39 (51%)
 Frame = -3

Query: 136 ISTDLTSVVMLAGAKTTTVPGFRIPVSTLPTGTVPIPPI 20
           + T++T+ +        ++ G  +P+++LP  +  I  I
Sbjct: 831 VVTNVTTTINTPTTSVISMSGTTVPITSLPASSTSINSI 869


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +3

Query: 201 SVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPG 308
           S ++LR  ++A +   + P+G      Q++VLN  G
Sbjct: 283 STRDLREIHLAYNGLRDLPKGIFTRLEQLLVLNLAG 318



 Score = 21.4 bits (43), Expect = 7.7
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -2

Query: 503 LEGLHTQGLGGNQVDNGGITRFNGFRVV 420
           L  LHT  L  N++   G   FNG  V+
Sbjct: 382 LYNLHTLELSDNKLRTVGAQLFNGLFVL 409


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +1

Query: 388 KSTVVLVNQQRTTLNPLNLVM 450
           KST   V  +R T+NP ++++
Sbjct: 142 KSTTTTVEVKRDTINPEDVIL 162


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 11/41 (26%), Positives = 18/41 (43%)
 Frame = +1

Query: 172 TMLVSTSKTYLSRNCAVVTLQEIRKTTHPGELQTSQRKSLC 294
           ++ V TS + L  +  +    + R   HP EL+     S C
Sbjct: 402 SLFVETSASELVESSVLFPSLDSRDELHPRELEAVNLGSAC 442


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,155
Number of Sequences: 438
Number of extensions: 4540
Number of successful extensions: 22
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)