Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_M19
         (579 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0905 - 20722090-20722207,20722314-20722395,20722698-207228...    30   1.5  
04_04_1377 - 33064906-33065607                                         26   1.6  
01_05_0519 - 22897277-22897986,22898126-22898225                       29   2.0  
09_04_0670 + 19348468-19348949,19351594-19351724,19352433-19353238     28   6.2  
08_02_1402 - 26786011-26786128,26786263-26786516,26787505-267877...    28   6.2  
02_02_0310 - 8842286-8843314                                           28   6.2  
01_05_0602 + 23577328-23579805                                         28   6.2  
12_01_0874 + 8384332-8384657,8385447-8386044                           27   8.2  
05_04_0028 + 17302359-17302445,17303887-17303952,17305415-173054...    27   8.2  

>04_03_0905 -
           20722090-20722207,20722314-20722395,20722698-20722851,
           20723026-20723089,20724282-20724404,20725326-20725452,
           20725541-20726171
          Length = 432

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -2

Query: 320 RAEWGRQWGW*CRAVRRVS*PKRRRGSSLRFG 225
           R+E GR+W W C    R    +RRRG     G
Sbjct: 179 RSEAGRRWRWRCSETARAPPQERRRGGRCTCG 210


>04_04_1377 - 33064906-33065607
          Length = 233

 Score = 26.2 bits (55), Expect(2) = 1.6
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +1

Query: 286 HHHPHCRPHSALQ 324
           HHHPH +PH   Q
Sbjct: 187 HHHPHLQPHGEEQ 199



 Score = 22.2 bits (45), Expect(2) = 1.6
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = +1

Query: 271 RRTARHHHPHCRPH 312
           R+   HHH H  PH
Sbjct: 178 RQKHHHHHHHHHPH 191


>01_05_0519 - 22897277-22897986,22898126-22898225
          Length = 269

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = +2

Query: 227 QNEEKTLVYVLVKKPDEQPDITIPTAAPTQPSKPEVYFIKYKTQKE 364
           Q+E +T +    KK +E P  T P AAP QP+  E +  + K + E
Sbjct: 137 QSERRTQLSAREKK-EEPPKATAPAAAPPQPAARERHDEEEKARAE 181


>09_04_0670 + 19348468-19348949,19351594-19351724,19352433-19353238
          Length = 472

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = +1

Query: 163 DHLH*GTGTSRARGTHHSRSCPKRRED--PRLRFGQETRRTARHHHPH 300
           D +  G+  +  +GT  +   P R E   P +   +ET   + HHHPH
Sbjct: 192 DSMSSGSFMTSQQGTRFASFTPPRPEPSWPGIIKSEETPYYSHHHHPH 239


>08_02_1402 -
           26786011-26786128,26786263-26786516,26787505-26787732,
           26788920-26789759
          Length = 479

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 253 RFGQETRRTARHHHPHCRPHSALQTRS 333
           +  +  RR A   HPH +PHS L  R+
Sbjct: 181 QLAEMARREAETAHPHTQPHSDLSPRT 207


>02_02_0310 - 8842286-8843314
          Length = 342

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
 Frame = +1

Query: 187 TSRARGTHHSRSCPKRREDPRLRFGQETRRTAR-HHHPHCRPHSALQTRSLLHQIQD 354
           T R    HH     +  E+   R+ ++   ++R HHH  CR H      S  H+ +D
Sbjct: 262 TKRFHHHHHKDDDERELEEMARRWIRKALMSSRMHHHRGCRFHHHHHHLSFRHRAED 318


>01_05_0602 + 23577328-23579805
          Length = 825

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 17/51 (33%), Positives = 20/51 (39%)
 Frame = +1

Query: 190 SRARGTHHSRSCPKRREDPRLRFGQETRRTARHHHPHCRPHSALQTRSLLH 342
           SR    H S   P  R+D RLR   E  R+       C    AL+    LH
Sbjct: 33  SRLAAAHPSAPSPSPRDDERLRLRAEELRSYAAALQGCAASRALRRGKALH 83


>12_01_0874 + 8384332-8384657,8385447-8386044
          Length = 307

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +1

Query: 280 ARHHHPHCRPHSALQTRSLLHQIQD 354
           AR  HP C+P   +  R L H + D
Sbjct: 8   ARQQHPTCQPSHGVPDRRLRHHVAD 32


>05_04_0028 +
           17302359-17302445,17303887-17303952,17305415-17305489,
           17305638-17305737,17305819-17305865,17305937-17305994,
           17306161-17306210,17306417-17306473,17306561-17306703,
           17306793-17306834,17307083-17307124,17308239-17308272,
           17308342-17308443,17310373-17310652,17311202-17311332,
           17311676-17311773,17312525-17312717
          Length = 534

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
 Frame = +1

Query: 190 SRARGTHHSRSCPKRREDPRLRFGQETRRTARHHHPH----CRPHSALQTRS 333
           SR+RG  HSRS  + R   R      +R  +R   P      R HS ++ RS
Sbjct: 192 SRSRGRSHSRSISRSRSRSRSISRSRSRSYSRSRSPRSRSASRSHSPVKERS 243


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,740,397
Number of Sequences: 37544
Number of extensions: 144664
Number of successful extensions: 652
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)