Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_M18
(666 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0460 - 18098187-18098248,18098331-18098399,18098468-180994... 31 0.82
08_02_1277 + 25823835-25825113,25825201-25825418,25825501-258257... 31 0.82
01_01_0128 - 1167904-1168749,1168790-1168863,1169419-1169491,117... 31 0.82
05_02_0034 + 5856165-5856183,5858845-5859173,5859275-5859277,585... 30 1.4
03_01_0085 + 690618-691012,691114-691193,691775-691959,692363-69... 29 3.3
08_01_0378 + 3360215-3360253,3360326-3360437,3362176-3362213,336... 29 4.4
03_02_0415 - 8263459-8263611,8263788-8263919,8264841-8264936,826... 29 4.4
06_03_0433 - 20718726-20719895 28 5.8
12_01_0372 + 2867471-2867775,2867805-2867901,2868539-2868916 28 7.7
06_01_0926 - 7139220-7139318,7139394-7139478,7139573-7139643,713... 28 7.7
05_01_0213 - 1606383-1606816,1607695-1608355 28 7.7
01_01_0057 - 435295-435731,435866-435914,436041-436437,437807-43... 28 7.7
>10_08_0460 -
18098187-18098248,18098331-18098399,18098468-18099434,
18100089-18100808,18100942-18101031,18101076-18101138,
18101223-18101366,18101471-18101527,18101606-18101680,
18101757-18101836,18101937-18102050,18102166-18102258,
18102470-18102553,18102812-18102859,18105207-18105337,
18105903-18106135
Length = 1009
Score = 31.1 bits (67), Expect = 0.82
Identities = 22/97 (22%), Positives = 43/97 (44%)
Frame = +3
Query: 102 NKLVDHAVSQQHHQETTSESHIQXXXXXXXXXXXXXSDNVNSRITQHSTSNNQDIKQSGT 281
N + +H + ++H++ ++N S ITQ S N QSGT
Sbjct: 140 NSISEHKQKVSFETQGNKQNHMKQNAGIRIMPYAEPNENSKS-ITQGSKEGNNKTIQSGT 198
Query: 282 HTQRVVSSDHSGVNSSERYIVDNQSGHNKNSATYITK 392
+ ++ + S + SER +D + H + +++ IT+
Sbjct: 199 NIHQLQDGERS-LKESERNKIDTK--HTEETSSSITQ 232
>08_02_1277 + 25823835-25825113,25825201-25825418,25825501-25825724,
25826468-25827080,25827735-25827775,25830549-25831191,
25832595-25834012,25834110-25834251,25834415-25834522,
25835346-25835558,25835643-25835753,25836099-25836293,
25836555-25836695,25836835-25836909
Length = 1806
Score = 31.1 bits (67), Expect = 0.82
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +3
Query: 303 SDHSGVNSSERYIVD--NQSGHNKNSATYITKGIHVEHNISKSTQHVTNKSLSDS 461
SDHS +NSS + +D SG N + +T + H+ S S+ V + S D+
Sbjct: 1033 SDHSDINSSTNFSIDAVKTSGLNSWTPVPVTNTVRSTHSNSISSTSVPSSSSPDN 1087
>01_01_0128 - 1167904-1168749,1168790-1168863,1169419-1169491,
1171148-1171398,1171442-1171687,1172220-1172415,
1172796-1172876,1172966-1173169,1173671-1173880,
1173953-1174174,1174437-1174480,1174974-1175052,
1175066-1175227,1175337-1175564,1175786-1175815,
1175905-1176273,1176356-1176571,1177202-1177683,
1177930-1177975
Length = 1352
Score = 31.1 bits (67), Expect = 0.82
Identities = 39/149 (26%), Positives = 67/149 (44%), Gaps = 12/149 (8%)
Frame = +3
Query: 228 RITQHSTSNNQDIKQSGTHTQRVVSSDHSGVNSSERYIVDNQSGHNKNSATYITKGIHVE 407
R +H S++ + K+ ++R SSD S S+ Y ++ + + ++ K H
Sbjct: 1150 RHRKHGHSDSDEAKRHKRRSKRR-SSDSSDDTDSDEYDSGSEEENRRKKRSHRRK--HRR 1206
Query: 408 HNISKSTQHVTNKSLSDSVTKTSIE------FQRAMH---GGDDSTTNVDRSTRGGH--H 554
H+ S+S ++ S D ++S + R H GDDS + + R H H
Sbjct: 1207 HS-SRSDSDASDYSSDDEERRSSKKDHSSSRSHRHHHHRSSGDDSGSESEERGRSRHKKH 1265
Query: 555 KRTSDLISDASS-TNSVLHRKGLSSNTES 638
R+SD DA+S +N+ HR+ S S
Sbjct: 1266 HRSSD--EDATSDSNNHKHRRSRSLEESS 1292
>05_02_0034 + 5856165-5856183,5858845-5859173,5859275-5859277,
5859440-5859517,5859623-5860090,5860378-5860437,
5860442-5860666,5860791-5860952,5861502-5861870,
5861950-5863390,5863598-5863701,5863744-5863779,
5863780-5863977,5864275-5864538
Length = 1251
Score = 30.3 bits (65), Expect = 1.4
Identities = 30/149 (20%), Positives = 61/149 (40%), Gaps = 2/149 (1%)
Frame = +3
Query: 210 SDNVNSRITQHSTSNNQDIKQSGTHTQR--VVSSDHSGVNSSERYIVDNQSGHNKNSATY 383
++NV + Q + N +K+ + +SD +G+ + GH K SA
Sbjct: 738 TNNVCPSVEQRKSENISPLKEPCVRNELSCTTNSDSNGLQYN-----GGLGGH-KGSAPG 791
Query: 384 ITKGIHVEHNISKSTQHVTNKSLSDSVTKTSIEFQRAMHGGDDSTTNVDRSTRGGHHKRT 563
+ + + +T+ ++ S+S + + + + + S T RS G HH R+
Sbjct: 792 LPVSSSPSFSSNVATRPISTSSVSMKIVQGLVASKSCIQAS--SRTGDSRSLLGEHHNRS 849
Query: 564 SDLISDASSTNSVLHRKGLSSNTESSPFH 650
+I D ++ S L S +S ++
Sbjct: 850 PAMIHDGTNMKSSLESSNNSCRLIASDYN 878
>03_01_0085 + 690618-691012,691114-691193,691775-691959,692363-693320,
693391-693518,693951-694010,694113-694163,694704-694821,
694990-695915,695916-697707,697810-697943,698029-698526
Length = 1774
Score = 29.1 bits (62), Expect = 3.3
Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 7/111 (6%)
Frame = +3
Query: 216 NVNSRITQHSTSNNQDIKQSGTHTQRVVSSDHSGVNS---SERYIVDNQSGHNK-NSATY 383
++ S+I S+S+NQDIK + S S SE Y+ DNQ + S+
Sbjct: 1314 SLQSKILPESSSDNQDIKCEDPSPTPISKSKEVSPQSKILSESYL-DNQDVERECPSSIL 1372
Query: 384 ITKGIHVEHNISKSTQHVTNKSLSDSVTKTS---IEFQRAMHGGDDSTTNV 527
IT+ + ++ S K+ S V + S F ++ GDD+ +V
Sbjct: 1373 ITESKELAVDLPGSISLAPEKTASTDVGENSSLAFIFPKSTLAGDDALKSV 1423
>08_01_0378 +
3360215-3360253,3360326-3360437,3362176-3362213,
3363949-3363966,3364629-3364847,3364937-3366727,
3367764-3367827,3367915-3367975,3368685-3368694
Length = 783
Score = 28.7 bits (61), Expect = 4.4
Identities = 33/139 (23%), Positives = 55/139 (39%), Gaps = 8/139 (5%)
Frame = +3
Query: 216 NVNSRITQHSTSNNQDIKQSGTHTQRVVSSDHSGVNSS---ERYIVDNQSGHNKNSATYI 386
+VN + H S ++ + T + VV + +++ + +++Q N
Sbjct: 178 SVNKSSSNHGASRG--LEPTKTEVKDVVILERDSISNGAGKDAKDINDQEMERLNGIHIS 235
Query: 387 TKGIHVEHN-ISKSTQHVTNKSLSDSVTKTSIEFQRAMHGGDD--STTNVDRS-TRGGHH 554
+K H N + S+Q KS S T +A H D T + T G H
Sbjct: 236 SKPDHSHENCLDTSSQQFKPKSNSVETTYVDWSAAKASHYQMDRNGVTGFQATGTEGSHP 295
Query: 555 KRTSDLISDASST-NSVLH 608
+TSD + AS T N +H
Sbjct: 296 DQTSDQMGGASGTMNQCIH 314
>03_02_0415 -
8263459-8263611,8263788-8263919,8264841-8264936,
8265021-8265137,8265352-8265435,8265517-8265577,
8266217-8266266,8266544-8266633,8267539-8267757,
8269207-8269262,8269469-8269546,8269707-8269811,
8269925-8270069,8270310-8270388,8270470-8270537,
8271550-8271626,8272676-8272712,8273107-8273232,
8273770-8273805
Length = 602
Score = 28.7 bits (61), Expect = 4.4
Identities = 29/133 (21%), Positives = 54/133 (40%), Gaps = 11/133 (8%)
Frame = +3
Query: 270 QSGTHTQRVVSSDHSGVNSSERYIVDNQSGHNKNSATYITKGIHVEHNISKSTQHVTNKS 449
+ G+++ + G + + Y DN +S Y + ++E ++ T+H + S
Sbjct: 272 EDGSYSSDAYTESEDG-DFDKEYSTDNDGPEEDDS--YDSGEDNIEEDMDDDTEHSSGGS 328
Query: 450 LSDSVTKTSIEFQR--------AMHGGDDSTTNVDRSTRGGHHKRTSDLIS---DASSTN 596
D+ KTS+ + A +G D ++ R GH DL + D S +
Sbjct: 329 ECDNNIKTSVSDDKVKSNNSGTASNGNDQGLQPPKKAARTGHGAARKDLSAEEIDYCSDD 388
Query: 597 SVLHRKGLSSNTE 635
L K +S T+
Sbjct: 389 ETLIEKLENSKTD 401
>06_03_0433 - 20718726-20719895
Length = 389
Score = 28.3 bits (60), Expect = 5.8
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Frame = +3
Query: 435 VTNKSLSDSVTKTSIEFQRAMHGGDDSTTNVDRSTRGGHHKRTSDLISDASSTN---SVL 605
V +K +++ +T E DD N DRS G H ++D ++A+S + +
Sbjct: 54 VVSKPDEENIGETVFEKDNT-DSHDDDIRNTDRSKAGEGHGSSADGNTEANSNDEDGTTN 112
Query: 606 HRKGLSSNTESS 641
H +G S+ ES+
Sbjct: 113 HSEGEKSDAESN 124
>12_01_0372 + 2867471-2867775,2867805-2867901,2868539-2868916
Length = 259
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/92 (15%), Positives = 33/92 (35%)
Frame = +3
Query: 111 VDHAVSQQHHQETTSESHIQXXXXXXXXXXXXXSDNVNSRITQHSTSNNQDIKQSGTHTQ 290
+ H + ++HH+ +S + +DN + + + SG H
Sbjct: 15 LSHGLLRRHHRSGSSAAATAYSAAGSFASASAFTDNTEANLAAPKEEHG-----SGRHGD 69
Query: 291 RVVSSDHSGVNSSERYIVDNQSGHNKNSATYI 386
+H G + E++ D + H + ++
Sbjct: 70 GGAEEEHGGAGAEEKHGDDMEEEHGGGGSGFL 101
>06_01_0926 -
7139220-7139318,7139394-7139478,7139573-7139643,
7139996-7140076,7140805-7140895,7141242-7141330,
7141749-7141802,7141906-7142085,7142175-7142237,
7142575-7142705,7142807-7142900,7143343-7143684,
7143957-7144348,7145010-7148487,7149101-7149187,
7149324-7149367,7149495-7149591,7150429-7150572
Length = 1873
Score = 27.9 bits (59), Expect = 7.7
Identities = 21/85 (24%), Positives = 39/85 (45%)
Frame = +3
Query: 222 NSRITQHSTSNNQDIKQSGTHTQRVVSSDHSGVNSSERYIVDNQSGHNKNSATYITKGIH 401
N+ T+ S+S+ D+K + T T V +HSG+ + ++++A + K
Sbjct: 456 NNTDTEKSSSSAIDVKLAETSTTPTVPQEHSGITEKPSQTSADDVKPSESTAAVVKK--Q 513
Query: 402 VEHNISKSTQHVTNKSLSDSVTKTS 476
+ NI Q S++D+ T S
Sbjct: 514 WQRNIGFQKQ--PQSSVTDAKTPES 536
>05_01_0213 - 1606383-1606816,1607695-1608355
Length = 364
Score = 27.9 bits (59), Expect = 7.7
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +3
Query: 486 QRAMH-GGDDSTTNVDRSTRGGHHKRTSDLISDASSTNSVLHRKGLSSNTESS 641
+R +H GGDD G ++ +SS SVLH + SS++ SS
Sbjct: 140 RRKLHYGGDDDDDEAQHPGHGRRRAAATERGMPSSSPVSVLHAQHSSSSSSSS 192
>01_01_0057 -
435295-435731,435866-435914,436041-436437,437807-437906,
438316-438388,439322-439528
Length = 420
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -2
Query: 395 SFCYICRRIFVMPTLVIHNISFAGIYTRV 309
S C++C FV+PT V + S G RV
Sbjct: 242 SLCFVCETRFVVPTAVGEDFSTCGKQQRV 270
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,225,292
Number of Sequences: 37544
Number of extensions: 343633
Number of successful extensions: 944
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 942
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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