Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_M18
(666 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical ... 34 0.079
Z99278-4|CAB16492.1| 871|Caenorhabditis elegans Hypothetical pr... 29 2.2
Z99278-3|CAB16493.1| 867|Caenorhabditis elegans Hypothetical pr... 29 2.2
Z79603-10|CAI79233.1| 224|Caenorhabditis elegans Hypothetical p... 29 2.2
U80443-6|AAK68201.1| 643|Caenorhabditis elegans Ferm domain (pr... 29 2.2
U80443-5|AAD32269.1| 635|Caenorhabditis elegans Ferm domain (pr... 29 2.2
AF003134-2|AAB54141.5| 691|Caenorhabditis elegans Hypothetical ... 29 2.2
Z82089-5|CAD91717.1| 4541|Caenorhabditis elegans Hypothetical pr... 29 3.0
Z82089-4|CAB54513.2| 4648|Caenorhabditis elegans Hypothetical pr... 29 3.0
Z82089-3|CAB05004.2| 634|Caenorhabditis elegans Hypothetical pr... 29 3.0
Z82089-2|CAB05003.2| 4530|Caenorhabditis elegans Hypothetical pr... 29 3.0
Z81499-7|CAD91628.1| 4541|Caenorhabditis elegans Hypothetical pr... 29 3.0
Z81499-6|CAB54224.2| 4648|Caenorhabditis elegans Hypothetical pr... 29 3.0
Z81499-5|CAB04091.2| 634|Caenorhabditis elegans Hypothetical pr... 29 3.0
Z81499-4|CAB04090.2| 4530|Caenorhabditis elegans Hypothetical pr... 29 3.0
Z70038-1|CAA93884.1| 2219|Caenorhabditis elegans Hypothetical pr... 29 3.0
U40799-9|AAA81488.2| 1292|Caenorhabditis elegans Hypothetical pr... 29 3.9
U29488-12|AAA68769.3| 617|Caenorhabditis elegans Hypothetical p... 28 5.2
AY204188-1|AAO39192.1| 364|Caenorhabditis elegans nuclear recep... 28 5.2
AF100669-6|AAM97937.1| 242|Caenorhabditis elegans Nuclear hormo... 28 5.2
AF100669-5|AAU05545.1| 364|Caenorhabditis elegans Nuclear hormo... 28 5.2
AF100669-4|AAM97936.1| 395|Caenorhabditis elegans Nuclear hormo... 28 5.2
AF067222-1|AAC17017.2| 1464|Caenorhabditis elegans Hypothetical ... 28 5.2
Z49071-1|CAA88873.2| 269|Caenorhabditis elegans Hypothetical pr... 28 6.8
Z81470-3|CAB03880.1| 401|Caenorhabditis elegans Hypothetical pr... 27 9.1
Z81109-3|CAB03246.1| 318|Caenorhabditis elegans Hypothetical pr... 27 9.1
Z78413-8|CAB01665.2| 541|Caenorhabditis elegans Hypothetical pr... 27 9.1
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr... 27 9.1
U41035-2|AAM69088.1| 1371|Caenorhabditis elegans Uncoordinated p... 27 9.1
U41035-1|AAB37028.2| 1563|Caenorhabditis elegans Uncoordinated p... 27 9.1
U39676-3|AAB37032.2| 941|Caenorhabditis elegans Hypothetical pr... 27 9.1
AF257062-1|AAK49331.1| 1563|Caenorhabditis elegans Rab3-interact... 27 9.1
>AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical
protein Y39B6A.1 protein.
Length = 735
Score = 34.3 bits (75), Expect = 0.079
Identities = 33/191 (17%), Positives = 76/191 (39%), Gaps = 10/191 (5%)
Frame = +3
Query: 117 HAVSQQHHQETTSESHIQ---XXXXXXXXXXXXXSDNVNSRITQHSTSNNQDIK-QSGTH 284
H HH+ H++ S + +S + S+S ++D K H
Sbjct: 86 HGAHPGHHEVHHHHHHVKAQDSSSSSSSSSSSSSSSSSSSSSSSSSSSESEDEKHHHKKH 145
Query: 285 TQRVVSSDHSGVNSSERYIVDNQSGHNKNSATYITKGIHVEHNISK-STQHV-TNKSLSD 458
++ + H SS + S + +S++ ++ +H+ K + +H+ + ++
Sbjct: 146 AKKHLKKHHKKAESSSSSSSSSSSSSSSSSSSSSSESEDEKHHHKKHAKKHLKKHHKKAE 205
Query: 459 SVTKTSIEFQRAMHGGDDSTTNVDRSTRGGHHKRTS----DLISDASSTNSVLHRKGLSS 626
S + +S + S+++ + HHK+ + +++SS++S SS
Sbjct: 206 SSSSSSSSSSSSSSSSSSSSSSSESEDEKHHHKKHAVKKHHKKAESSSSSSSSSSSSSSS 265
Query: 627 NTESSPFH*HK 659
++ H HK
Sbjct: 266 SSSEDEKHHHK 276
Score = 31.1 bits (67), Expect = 0.73
Identities = 24/178 (13%), Positives = 60/178 (33%)
Frame = +3
Query: 21 HDSRGSTHRHTDNSNNQRHTLSQQSTQNKLVDHAVSQQHHQETTSESHIQXXXXXXXXXX 200
H + + +H + + + S S+ + + HH++ ++ H++
Sbjct: 236 HHKKHAVKKHHKKAESSSSSSSSSSSSSSSSSSEDEKHHHKKHAAKKHVKHHKKAASSSS 295
Query: 201 XXXSDNVNSRITQHSTSNNQDIKQSGTHTQRVVSSDHSGVNSSERYIVDNQSGHNKNSAT 380
S + +S + S+S+ + ++ ++V G ++ + S + +S++
Sbjct: 296 SSSSSSSSSSSSSSSSSSESEDEKK---KKKVHHKKSHGKKHHKKAASSSSSSSSSSSSS 352
Query: 381 YITKGIHVEHNISKSTQHVTNKSLSDSVTKTSIEFQRAMHGGDDSTTNVDRSTRGGHH 554
+ E + H + D E + H V G HH
Sbjct: 353 SSSSSSESEDEKKHAPAHHEHHEHKDGAHHEHKEGEHHEHAAHHDEHGVHHRHHGEHH 410
>Z99278-4|CAB16492.1| 871|Caenorhabditis elegans Hypothetical
protein Y53C12B.3b protein.
Length = 871
Score = 29.5 bits (63), Expect = 2.2
Identities = 25/99 (25%), Positives = 39/99 (39%), Gaps = 10/99 (10%)
Frame = +3
Query: 27 SRGSTHRHTDNSNNQRHTLSQQSTQNK-LVDHAVSQQHHQETTSES---------HIQXX 176
SRG ++H+ ++NQ + SQ QN+ D + Q + ES H+Q
Sbjct: 555 SRGHGYQHSRQNSNQSYNSSQSYPQNRGNFDSSSQYQSDSQQVDESVTQLTNRIEHLQPV 614
Query: 177 XXXXXXXXXXXSDNVNSRITQHSTSNNQDIKQSGTHTQR 293
V S+ Q ST N++ +S T R
Sbjct: 615 SSRAGSPSKQILQLVESKDDQTSTENSESPSRSSTPKHR 653
>Z99278-3|CAB16493.1| 867|Caenorhabditis elegans Hypothetical
protein Y53C12B.3a protein.
Length = 867
Score = 29.5 bits (63), Expect = 2.2
Identities = 25/99 (25%), Positives = 39/99 (39%), Gaps = 10/99 (10%)
Frame = +3
Query: 27 SRGSTHRHTDNSNNQRHTLSQQSTQNK-LVDHAVSQQHHQETTSES---------HIQXX 176
SRG ++H+ ++NQ + SQ QN+ D + Q + ES H+Q
Sbjct: 552 SRGHGYQHSRQNSNQSYNSSQSYPQNRGNFDSSSQYQSDSQQVDESVTQLTNRIEHLQPV 611
Query: 177 XXXXXXXXXXXSDNVNSRITQHSTSNNQDIKQSGTHTQR 293
V S+ Q ST N++ +S T R
Sbjct: 612 SSRAGSPSKQILQLVESKDDQTSTENSESPSRSSTPKHR 650
>Z79603-10|CAI79233.1| 224|Caenorhabditis elegans Hypothetical
protein M163.11 protein.
Length = 224
Score = 29.5 bits (63), Expect = 2.2
Identities = 19/68 (27%), Positives = 30/68 (44%)
Frame = +3
Query: 438 TNKSLSDSVTKTSIEFQRAMHGGDDSTTNVDRSTRGGHHKRTSDLISDASSTNSVLHRKG 617
++ S S S TS A DDS+++ S+ +SD + SS+ +
Sbjct: 43 SDSSSSSSTASTSSSSSTAATSSDDSSSSSSSSSSSASSTSSSDTTTADSSSTTSSDSST 102
Query: 618 LSSNTESS 641
SSN+ SS
Sbjct: 103 TSSNSSSS 110
Score = 27.9 bits (59), Expect = 6.8
Identities = 26/105 (24%), Positives = 46/105 (43%)
Frame = +3
Query: 285 TQRVVSSDHSGVNSSERYIVDNQSGHNKNSATYITKGIHVEHNISKSTQHVTNKSLSDSV 464
TQ S+ +SS+ + + + +S+T T + S S+ ++ S SD+
Sbjct: 29 TQYCASTCSLCSDSSDSSSSSSTASTSSSSSTAATSSDDSSSSSSSSSSSASSTSSSDTT 88
Query: 465 TKTSIEFQRAMHGGDDSTTNVDRSTRGGHHKRTSDLISDASSTNS 599
T S + D STT+ + S+ TS + S +SST +
Sbjct: 89 TADS----SSTTSSDSSTTSSNSSSSTSSSDSTSVVSSTSSSTTT 129
>U80443-6|AAK68201.1| 643|Caenorhabditis elegans Ferm domain
(protein4.1-ezrin-radixin-moesin) family protein 4,
isoform b protein.
Length = 643
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +3
Query: 6 RVNSTHDSRGSTHRHTDNSNNQRHTLSQQSTQNKLVDHAVS 128
+V + HD+ S+ DNS Q + LS+ + N ++ VS
Sbjct: 456 KVTTVHDNTASSSSSPDNSETQNNNLSKITNLNLSIEREVS 496
>U80443-5|AAD32269.1| 635|Caenorhabditis elegans Ferm domain
(protein4.1-ezrin-radixin-moesin) family protein 4,
isoform a protein.
Length = 635
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +3
Query: 6 RVNSTHDSRGSTHRHTDNSNNQRHTLSQQSTQNKLVDHAVS 128
+V + HD+ S+ DNS Q + LS+ + N ++ VS
Sbjct: 448 KVTTVHDNTASSSSSPDNSETQNNNLSKITNLNLSIEREVS 488
>AF003134-2|AAB54141.5| 691|Caenorhabditis elegans Hypothetical
protein ZC581.3 protein.
Length = 691
Score = 29.5 bits (63), Expect = 2.2
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Frame = +3
Query: 438 TNKSLSDSVTKTSIEFQRAMHGGDDS---TTNVDRSTRGGHHKRTSDLISDASSTNSVLH 608
T S+ + TS E + G DD N+D + + ++ LIS ++STNS+ H
Sbjct: 324 TQNSILELDHVTSPETSTSESGNDDLDAIVNNLDEDKQDQGRQESTQLISPSTSTNSLTH 383
Query: 609 RKGLSSNTESSPFH 650
L+ TE H
Sbjct: 384 ---LNDKTEEDVDH 394
>Z82089-5|CAD91717.1| 4541|Caenorhabditis elegans Hypothetical protein
ZK270.2e protein.
Length = 4541
Score = 29.1 bits (62), Expect = 3.0
Identities = 34/163 (20%), Positives = 64/163 (39%)
Frame = +3
Query: 24 DSRGSTHRHTDNSNNQRHTLSQQSTQNKLVDHAVSQQHHQETTSESHIQXXXXXXXXXXX 203
D G T S+ +HT+ QS QN +VD Q ++
Sbjct: 4362 DENGRQITRTVKSSQVKHTVQTQSFQNYIVD------GDQVPVGVVDVERSREQLTPLGQ 4415
Query: 204 XXSDNVNSRITQHSTSNNQDIKQSGTHTQRVVSSDHSGVNSSERYIVDNQSGHNKNSATY 383
S + +S + Q+ N I + T T+ + G NS+ + G +S +
Sbjct: 4416 KASSSTSSDV-QNGGGENGGIVE--TQTRTMTYEAQGGENSAPPGWAEEGLGEYVSSKS- 4471
Query: 384 ITKGIHVEHNISKSTQHVTNKSLSDSVTKTSIEFQRAMHGGDD 512
+T+G +++ + +T K+ D + +T +E + +H D
Sbjct: 4472 VTQG-------NRTIETITYKTEKDGIVETHVEHRVTIHSDGD 4507
>Z82089-4|CAB54513.2| 4648|Caenorhabditis elegans Hypothetical protein
ZK270.2d protein.
Length = 4648
Score = 29.1 bits (62), Expect = 3.0
Identities = 34/163 (20%), Positives = 64/163 (39%)
Frame = +3
Query: 24 DSRGSTHRHTDNSNNQRHTLSQQSTQNKLVDHAVSQQHHQETTSESHIQXXXXXXXXXXX 203
D G T S+ +HT+ QS QN +VD Q ++
Sbjct: 4469 DENGRQITRTVKSSQVKHTVQTQSFQNYIVD------GDQVPVGVVDVERSREQLTPLGQ 4522
Query: 204 XXSDNVNSRITQHSTSNNQDIKQSGTHTQRVVSSDHSGVNSSERYIVDNQSGHNKNSATY 383
S + +S + Q+ N I + T T+ + G NS+ + G +S +
Sbjct: 4523 KASSSTSSDV-QNGGGENGGIVE--TQTRTMTYEAQGGENSAPPGWAEEGLGEYVSSKS- 4578
Query: 384 ITKGIHVEHNISKSTQHVTNKSLSDSVTKTSIEFQRAMHGGDD 512
+T+G +++ + +T K+ D + +T +E + +H D
Sbjct: 4579 VTQG-------NRTIETITYKTEKDGIVETHVEHRVTIHSDGD 4614
>Z82089-3|CAB05004.2| 634|Caenorhabditis elegans Hypothetical
protein ZK270.2b protein.
Length = 634
Score = 29.1 bits (62), Expect = 3.0
Identities = 34/163 (20%), Positives = 64/163 (39%)
Frame = +3
Query: 24 DSRGSTHRHTDNSNNQRHTLSQQSTQNKLVDHAVSQQHHQETTSESHIQXXXXXXXXXXX 203
D G T S+ +HT+ QS QN +VD Q ++
Sbjct: 455 DENGRQITRTVKSSQVKHTVQTQSFQNYIVD------GDQVPVGVVDVERSREQLTPLGQ 508
Query: 204 XXSDNVNSRITQHSTSNNQDIKQSGTHTQRVVSSDHSGVNSSERYIVDNQSGHNKNSATY 383
S + +S + Q+ N I + T T+ + G NS+ + G +S +
Sbjct: 509 KASSSTSSDV-QNGGGENGGIVE--TQTRTMTYEAQGGENSAPPGWAEEGLGEYVSSKS- 564
Query: 384 ITKGIHVEHNISKSTQHVTNKSLSDSVTKTSIEFQRAMHGGDD 512
+T+G +++ + +T K+ D + +T +E + +H D
Sbjct: 565 VTQG-------NRTIETITYKTEKDGIVETHVEHRVTIHSDGD 600
>Z82089-2|CAB05003.2| 4530|Caenorhabditis elegans Hypothetical protein
ZK270.2a protein.
Length = 4530
Score = 29.1 bits (62), Expect = 3.0
Identities = 34/163 (20%), Positives = 64/163 (39%)
Frame = +3
Query: 24 DSRGSTHRHTDNSNNQRHTLSQQSTQNKLVDHAVSQQHHQETTSESHIQXXXXXXXXXXX 203
D G T S+ +HT+ QS QN +VD Q ++
Sbjct: 4351 DENGRQITRTVKSSQVKHTVQTQSFQNYIVD------GDQVPVGVVDVERSREQLTPLGQ 4404
Query: 204 XXSDNVNSRITQHSTSNNQDIKQSGTHTQRVVSSDHSGVNSSERYIVDNQSGHNKNSATY 383
S + +S + Q+ N I + T T+ + G NS+ + G +S +
Sbjct: 4405 KASSSTSSDV-QNGGGENGGIVE--TQTRTMTYEAQGGENSAPPGWAEEGLGEYVSSKS- 4460
Query: 384 ITKGIHVEHNISKSTQHVTNKSLSDSVTKTSIEFQRAMHGGDD 512
+T+G +++ + +T K+ D + +T +E + +H D
Sbjct: 4461 VTQG-------NRTIETITYKTEKDGIVETHVEHRVTIHSDGD 4496
>Z81499-7|CAD91628.1| 4541|Caenorhabditis elegans Hypothetical protein
ZK270.2e protein.
Length = 4541
Score = 29.1 bits (62), Expect = 3.0
Identities = 34/163 (20%), Positives = 64/163 (39%)
Frame = +3
Query: 24 DSRGSTHRHTDNSNNQRHTLSQQSTQNKLVDHAVSQQHHQETTSESHIQXXXXXXXXXXX 203
D G T S+ +HT+ QS QN +VD Q ++
Sbjct: 4362 DENGRQITRTVKSSQVKHTVQTQSFQNYIVD------GDQVPVGVVDVERSREQLTPLGQ 4415
Query: 204 XXSDNVNSRITQHSTSNNQDIKQSGTHTQRVVSSDHSGVNSSERYIVDNQSGHNKNSATY 383
S + +S + Q+ N I + T T+ + G NS+ + G +S +
Sbjct: 4416 KASSSTSSDV-QNGGGENGGIVE--TQTRTMTYEAQGGENSAPPGWAEEGLGEYVSSKS- 4471
Query: 384 ITKGIHVEHNISKSTQHVTNKSLSDSVTKTSIEFQRAMHGGDD 512
+T+G +++ + +T K+ D + +T +E + +H D
Sbjct: 4472 VTQG-------NRTIETITYKTEKDGIVETHVEHRVTIHSDGD 4507
>Z81499-6|CAB54224.2| 4648|Caenorhabditis elegans Hypothetical protein
ZK270.2d protein.
Length = 4648
Score = 29.1 bits (62), Expect = 3.0
Identities = 34/163 (20%), Positives = 64/163 (39%)
Frame = +3
Query: 24 DSRGSTHRHTDNSNNQRHTLSQQSTQNKLVDHAVSQQHHQETTSESHIQXXXXXXXXXXX 203
D G T S+ +HT+ QS QN +VD Q ++
Sbjct: 4469 DENGRQITRTVKSSQVKHTVQTQSFQNYIVD------GDQVPVGVVDVERSREQLTPLGQ 4522
Query: 204 XXSDNVNSRITQHSTSNNQDIKQSGTHTQRVVSSDHSGVNSSERYIVDNQSGHNKNSATY 383
S + +S + Q+ N I + T T+ + G NS+ + G +S +
Sbjct: 4523 KASSSTSSDV-QNGGGENGGIVE--TQTRTMTYEAQGGENSAPPGWAEEGLGEYVSSKS- 4578
Query: 384 ITKGIHVEHNISKSTQHVTNKSLSDSVTKTSIEFQRAMHGGDD 512
+T+G +++ + +T K+ D + +T +E + +H D
Sbjct: 4579 VTQG-------NRTIETITYKTEKDGIVETHVEHRVTIHSDGD 4614
>Z81499-5|CAB04091.2| 634|Caenorhabditis elegans Hypothetical
protein ZK270.2b protein.
Length = 634
Score = 29.1 bits (62), Expect = 3.0
Identities = 34/163 (20%), Positives = 64/163 (39%)
Frame = +3
Query: 24 DSRGSTHRHTDNSNNQRHTLSQQSTQNKLVDHAVSQQHHQETTSESHIQXXXXXXXXXXX 203
D G T S+ +HT+ QS QN +VD Q ++
Sbjct: 455 DENGRQITRTVKSSQVKHTVQTQSFQNYIVD------GDQVPVGVVDVERSREQLTPLGQ 508
Query: 204 XXSDNVNSRITQHSTSNNQDIKQSGTHTQRVVSSDHSGVNSSERYIVDNQSGHNKNSATY 383
S + +S + Q+ N I + T T+ + G NS+ + G +S +
Sbjct: 509 KASSSTSSDV-QNGGGENGGIVE--TQTRTMTYEAQGGENSAPPGWAEEGLGEYVSSKS- 564
Query: 384 ITKGIHVEHNISKSTQHVTNKSLSDSVTKTSIEFQRAMHGGDD 512
+T+G +++ + +T K+ D + +T +E + +H D
Sbjct: 565 VTQG-------NRTIETITYKTEKDGIVETHVEHRVTIHSDGD 600
>Z81499-4|CAB04090.2| 4530|Caenorhabditis elegans Hypothetical protein
ZK270.2a protein.
Length = 4530
Score = 29.1 bits (62), Expect = 3.0
Identities = 34/163 (20%), Positives = 64/163 (39%)
Frame = +3
Query: 24 DSRGSTHRHTDNSNNQRHTLSQQSTQNKLVDHAVSQQHHQETTSESHIQXXXXXXXXXXX 203
D G T S+ +HT+ QS QN +VD Q ++
Sbjct: 4351 DENGRQITRTVKSSQVKHTVQTQSFQNYIVD------GDQVPVGVVDVERSREQLTPLGQ 4404
Query: 204 XXSDNVNSRITQHSTSNNQDIKQSGTHTQRVVSSDHSGVNSSERYIVDNQSGHNKNSATY 383
S + +S + Q+ N I + T T+ + G NS+ + G +S +
Sbjct: 4405 KASSSTSSDV-QNGGGENGGIVE--TQTRTMTYEAQGGENSAPPGWAEEGLGEYVSSKS- 4460
Query: 384 ITKGIHVEHNISKSTQHVTNKSLSDSVTKTSIEFQRAMHGGDD 512
+T+G +++ + +T K+ D + +T +E + +H D
Sbjct: 4461 VTQG-------NRTIETITYKTEKDGIVETHVEHRVTIHSDGD 4496
>Z70038-1|CAA93884.1| 2219|Caenorhabditis elegans Hypothetical
protein ZK1067.2 protein.
Length = 2219
Score = 29.1 bits (62), Expect = 3.0
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 6/60 (10%)
Frame = +3
Query: 6 RVNSTHDSRGSTHRHTDNSNNQRH-----TLSQQSTQNKLVDHAVSQQHHQETTS-ESHI 167
R + + D+ G HR D QRH S Q++ D Q + E+TS E+H+
Sbjct: 361 RRHKSPDNFGEVHRRLDEQQQQRHEDESSRYRDDSRQSRRADDRRDQYQYNESTSMENHL 420
>U40799-9|AAA81488.2| 1292|Caenorhabditis elegans Hypothetical protein
F42C5.10 protein.
Length = 1292
Score = 28.7 bits (61), Expect = 3.9
Identities = 28/144 (19%), Positives = 54/144 (37%), Gaps = 6/144 (4%)
Frame = +3
Query: 24 DSRGSTHRHTDNSNNQRHTLSQQSTQNKLVDHAVSQQHHQETTSESHIQXXXXXXXXXXX 203
D S H+D++ N + N D +V Q H E+ + SH+
Sbjct: 823 DDAASPRDHSDSAGNVDYVHKHIERYNAK-DASVVQDSHDESRAHSHMLSNTVQTHTHSQ 881
Query: 204 XXSDNVNSRITQHSTSNNQDIKQ------SGTHTQRVVSSDHSGVNSSERYIVDNQSGHN 365
+ N + ++TS + + ++ S TH VV + G Y + + H+
Sbjct: 882 LINQNQATHYDAYATSQHSNAQEYSTVHGSQTHRGSVVYDEPHG---QVVYDIPHDQEHH 938
Query: 366 KNSATYITKGIHVEHNISKSTQHV 437
++ + H H + ++HV
Sbjct: 939 HYDTVHV-QHHHHHHYHTDGSEHV 961
Score = 27.5 bits (58), Expect = 9.1
Identities = 33/143 (23%), Positives = 54/143 (37%), Gaps = 3/143 (2%)
Frame = +3
Query: 18 THDSRGSTHRHTDNSNNQRHTLSQQSTQNKLVDHAVSQQHHQETTSESHIQXXXXXXXXX 197
T S H H D + +Q T + + + HH +E IQ
Sbjct: 955 TDGSEHVHHYHQDENAHQHSTAENEHIHHYHTTSNENAHHHHSVQNEKDIQYQLAQS--- 1011
Query: 198 XXXXSDNVNSRITQHSTSNNQDIKQSGTHTQRVVSSDHSGVNSSERYIVDNQ---SGHNK 368
N I Q S +NN D +Q+ ++R H VNS D++ + H
Sbjct: 1012 --------NQSIRQMSKTNNWD-EQNIQSSKRAHIEAHIPVNSPFVKREDSRVSTTSHVS 1062
Query: 369 NSATYITKGIHVEHNISKSTQHV 437
++T T G V+ + S + Q++
Sbjct: 1063 TASTATTTGTVVQCSNSLNRQNI 1085
>U29488-12|AAA68769.3| 617|Caenorhabditis elegans Hypothetical
protein C56C10.1 protein.
Length = 617
Score = 28.3 bits (60), Expect = 5.2
Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Frame = -3
Query: 649 WNGELS--VFELRP----LRCKTELVEEASEIRSDVRLWWPPRVDLSTLVVESS 506
WN E+ VF LRP R E VEE+SE RS +W +++ L ESS
Sbjct: 77 WNIEIDQRVFFLRPNVENARKIVEYVEESSENRSICVIWCNRQLEECDLAFESS 130
>AY204188-1|AAO39192.1| 364|Caenorhabditis elegans nuclear receptor
NHR-104 protein.
Length = 364
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +2
Query: 317 CKFQRKIYCG*PKWA*QKFCDIYNKRNP 400
C+F++ + G K + QK DIY +RNP
Sbjct: 61 CRFEKCLKVGMKKESIQKHRDIYGRRNP 88
>AF100669-6|AAM97937.1| 242|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 104, isoform b protein.
Length = 242
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +2
Query: 317 CKFQRKIYCG*PKWA*QKFCDIYNKRNP 400
C+F++ + G K + QK DIY +RNP
Sbjct: 61 CRFEKCLKVGMKKESIQKHRDIYGRRNP 88
>AF100669-5|AAU05545.1| 364|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 104, isoform c protein.
Length = 364
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +2
Query: 317 CKFQRKIYCG*PKWA*QKFCDIYNKRNP 400
C+F++ + G K + QK DIY +RNP
Sbjct: 61 CRFEKCLKVGMKKESIQKHRDIYGRRNP 88
>AF100669-4|AAM97936.1| 395|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 104, isoform a protein.
Length = 395
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +2
Query: 317 CKFQRKIYCG*PKWA*QKFCDIYNKRNP 400
C+F++ + G K + QK DIY +RNP
Sbjct: 61 CRFEKCLKVGMKKESIQKHRDIYGRRNP 88
>AF067222-1|AAC17017.2| 1464|Caenorhabditis elegans Hypothetical
protein H11E01.3 protein.
Length = 1464
Score = 28.3 bits (60), Expect = 5.2
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 5/84 (5%)
Frame = +3
Query: 234 TQHSTSNNQDIKQSGTHTQRVVSSDHSGVNSSERYIVDNQSGHNKNSATYITKGIHVEHN 413
T+ +K+S TH++ + H+ V + I DN GH+ ++ + + IH
Sbjct: 1275 TREWDEGEHHVKESTTHSEHTDGNTHTSVQETITTITDN--GHDADNISTDSLVIHEPAA 1332
Query: 414 ISKSTQ-----HVTNKSLSDSVTK 470
++ TQ H N D VT+
Sbjct: 1333 DNQMTQSIYQPHSDNDDDDDKVTE 1356
>Z49071-1|CAA88873.2| 269|Caenorhabditis elegans Hypothetical
protein T22C8.1 protein.
Length = 269
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +3
Query: 555 KRTSDLISDASSTNSVLHRKGLSSNTE 635
K S +SD SSTN V R+ + +NT+
Sbjct: 220 KNISSFLSDTSSTNKVPDRRRIQANTK 246
>Z81470-3|CAB03880.1| 401|Caenorhabditis elegans Hypothetical
protein C14A6.3 protein.
Length = 401
Score = 27.5 bits (58), Expect = 9.1
Identities = 18/77 (23%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Frame = -2
Query: 509 ITTMHSSLKLNTCFCNTITKTLIG-NMLSRFRNIVFYVDSFCYICRRIFVMPTLVIHNIS 333
I +++S K+ C CN+I + + + R+I D + + + ++ N +
Sbjct: 236 IDSINSIEKITLC-CNSIPEITVNLTSILELRDIASDTDKLFVLLKTNSIQLLNMLSNAT 294
Query: 332 FAGIYTRVIGGNNPLGM 282
G Y +IG NP M
Sbjct: 295 IQGFYEEIIGIINPEDM 311
>Z81109-3|CAB03246.1| 318|Caenorhabditis elegans Hypothetical
protein R10D12.5 protein.
Length = 318
Score = 27.5 bits (58), Expect = 9.1
Identities = 17/87 (19%), Positives = 40/87 (45%), Gaps = 6/87 (6%)
Frame = -2
Query: 455 TKTLIGNMLSRFRNIVFYVDSFCYICRRIFVMPTLVIHNISFAGIYTRVIGGNNPLGM-- 282
T L+G + N+ F + F + + ++ +++H+ F Y+ ++ P
Sbjct: 11 TDGLVGPFPCKHMNLCFIIAFFVFATTMLHLLLLIIMHSKVFCNSYSMIVTYGRPTNFSS 70
Query: 281 ----SA*LFNVLVIRCRMLSNSRINVI 213
SA +N V++C +SN+ + ++
Sbjct: 71 SIPNSAPTWNDCVVQC-YISNTCVVIV 96
>Z78413-8|CAB01665.2| 541|Caenorhabditis elegans Hypothetical
protein T01C3.8 protein.
Length = 541
Score = 27.5 bits (58), Expect = 9.1
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Frame = -2
Query: 566 RCTLMVASTRRSVDISRGIITTMHS--SLKLNTCFCNTITKTLIGNMLSRFRNIVFYVDS 393
RC ++ +RS + RG++ S S + NT N T L ++ R+ VF + S
Sbjct: 136 RCIIITTDGKRSKSVMRGLLNKRRSSNSTRPNTHITNLDTTELSNEFMTSNRSRVF-IGS 194
Query: 392 F 390
F
Sbjct: 195 F 195
>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical protein
K06A9.1b protein.
Length = 2232
Score = 27.5 bits (58), Expect = 9.1
Identities = 39/186 (20%), Positives = 60/186 (32%), Gaps = 3/186 (1%)
Frame = +3
Query: 57 NSNNQRHTLSQQSTQNKLVDHAVSQQHHQETTSESHIQXXXXXXXXXXXXXSDNVNSRIT 236
NS+ T+ S + S I SD V+S T
Sbjct: 1320 NSSGSTVTIGSSEASTSGSSFKTSPSSISPVPTSSPIPSTTFASSTSGSTISD-VSSVST 1378
Query: 237 QHSTSNNQDIKQSGTHTQRVVSSDHSGVNSSERYIVDNQSGHNKNSATYITKGIHV-EHN 413
+ + + + + SS G + + V +Q+ + T T+ +
Sbjct: 1379 TSLAPLSSSLPSTVPSSTQSFSSTSEGSSKASSSPVPSQTSSTPTNPTGSTESSTLLSST 1438
Query: 414 ISKSTQHVTNKSLSDSVTKTSIEFQ--RAMHGGDDSTTNVDRSTRGGHHKRTSDLISDAS 587
IS STQH T S T S Q + G ST+ V S+ + S S S
Sbjct: 1439 ISGSTQHTTMSKASSGSTSPSTNSQTGSTVTMGSSSTSGVSTSSASSTQPQMS--TSQGS 1496
Query: 588 STNSVL 605
S S +
Sbjct: 1497 SAGSTV 1502
Score = 27.5 bits (58), Expect = 9.1
Identities = 40/200 (20%), Positives = 67/200 (33%)
Frame = +3
Query: 27 SRGSTHRHTDNSNNQRHTLSQQSTQNKLVDHAVSQQHHQETTSESHIQXXXXXXXXXXXX 206
S ST + T+ ST A S Q T+ S
Sbjct: 1701 SESSTAASASSQTGSTVTMGSSSTSGVSTSSASSGQPQMSTSQGSSAGSTVVSSTASPAA 1760
Query: 207 XSDNVNSRITQHSTSNNQDIKQSGTHTQRVVSSDHSGVNSSERYIVDNQSGHNKNSATYI 386
S +S T STS+ + ++ H+G S + + + N+ S
Sbjct: 1761 SSTAPSSTGTMSSTSSGTVGSTMSQSSTAASTTSHTG---STVTLGSSSTSSNQMST--- 1814
Query: 387 TKGIHVEHNISKSTQHVTNKSLSDSVTKTSIEFQRAMHGGDDSTTNVDRSTRGGHHKRTS 566
++G V ++ ST + + S S T T + G +T + ST +T
Sbjct: 1815 SQGSSVGSTVASSTAGLVSTSTVPSSTGT----MGSTSSGTVGSTISESSTTASASSQTG 1870
Query: 567 DLISDASSTNSVLHRKGLSS 626
++ SS+ S + SS
Sbjct: 1871 STVTMGSSSTSGVSTSSASS 1890
>U41035-2|AAM69088.1| 1371|Caenorhabditis elegans Uncoordinated
protein 10, isoform b protein.
Length = 1371
Score = 27.5 bits (58), Expect = 9.1
Identities = 33/181 (18%), Positives = 66/181 (36%), Gaps = 10/181 (5%)
Frame = +3
Query: 12 NSTHDSRGST----HRHTDNSNNQRHTLSQQSTQNKLVDHAVSQQHHQETTSESHIQXXX 179
N T + R T + T++S + T QQ +Q + A Q H+Q E H Q
Sbjct: 275 NMTQNQRNQTGPQNQQRTNDSRTMKQTPQQQPSQYQNNVGAAHQHHNQHGQQEQHHQ-QM 333
Query: 180 XXXXXXXXXXSDNVNSRITQHSTSNNQDIKQSGTHTQRVVSSDHSGVNSSERYIVDNQSG 359
+N N Q N Q + T + + G+N + N
Sbjct: 334 NEQRTDNNRMRENTNG---QGGMFNRQPSLEQTTPMNKYNHVEDDGMNQRPTFYTGNSEN 390
Query: 360 HNKNSATYITKGIHVEH-NISKSTQHVTNKSLS-----DSVTKTSIEFQRAMHGGDDSTT 521
+ + +G + N +++ +++ ++S D + ++ E ++ + S +
Sbjct: 391 DQRQFDGQMQQGSQQNNQNQNQNNRNLRKNTVSRVTEEDYASSSNFESKKQRNNSSQSQS 450
Query: 522 N 524
N
Sbjct: 451 N 451
>U41035-1|AAB37028.2| 1563|Caenorhabditis elegans Uncoordinated
protein 10, isoform a protein.
Length = 1563
Score = 27.5 bits (58), Expect = 9.1
Identities = 33/181 (18%), Positives = 66/181 (36%), Gaps = 10/181 (5%)
Frame = +3
Query: 12 NSTHDSRGST----HRHTDNSNNQRHTLSQQSTQNKLVDHAVSQQHHQETTSESHIQXXX 179
N T + R T + T++S + T QQ +Q + A Q H+Q E H Q
Sbjct: 275 NMTQNQRNQTGPQNQQRTNDSRTMKQTPQQQPSQYQNNVGAAHQHHNQHGQQEQHHQ-QM 333
Query: 180 XXXXXXXXXXSDNVNSRITQHSTSNNQDIKQSGTHTQRVVSSDHSGVNSSERYIVDNQSG 359
+N N Q N Q + T + + G+N + N
Sbjct: 334 NEQRTDNNRMRENTNG---QGGMFNRQPSLEQTTPMNKYNHVEDDGMNQRPTFYTGNSEN 390
Query: 360 HNKNSATYITKGIHVEH-NISKSTQHVTNKSLS-----DSVTKTSIEFQRAMHGGDDSTT 521
+ + +G + N +++ +++ ++S D + ++ E ++ + S +
Sbjct: 391 DQRQFDGQMQQGSQQNNQNQNQNNRNLRKNTVSRVTEEDYASSSNFESKKQRNNSSQSQS 450
Query: 522 N 524
N
Sbjct: 451 N 451
>U39676-3|AAB37032.2| 941|Caenorhabditis elegans Hypothetical
protein C23F12.2 protein.
Length = 941
Score = 27.5 bits (58), Expect = 9.1
Identities = 14/53 (26%), Positives = 21/53 (39%)
Frame = +3
Query: 3 TRVNSTHDSRGSTHRHTDNSNNQRHTLSQQSTQNKLVDHAVSQQHHQETTSES 161
T V+ +H S H +H T++ H QQHHQ ++S
Sbjct: 526 TEVDISHKSFAQRRLHIIKQLEAQHVNHIAQTKSHHQQHTQQQQHHQTVPTQS 578
>AF257062-1|AAK49331.1| 1563|Caenorhabditis elegans Rab3-interacting
molecule UNC-10 protein.
Length = 1563
Score = 27.5 bits (58), Expect = 9.1
Identities = 33/181 (18%), Positives = 66/181 (36%), Gaps = 10/181 (5%)
Frame = +3
Query: 12 NSTHDSRGST----HRHTDNSNNQRHTLSQQSTQNKLVDHAVSQQHHQETTSESHIQXXX 179
N T + R T + T++S + T QQ +Q + A Q H+Q E H Q
Sbjct: 275 NMTQNQRNQTGPQNQQRTNDSRTMKQTPQQQPSQYQNNVGAAHQHHNQHGQQEQHHQ-QM 333
Query: 180 XXXXXXXXXXSDNVNSRITQHSTSNNQDIKQSGTHTQRVVSSDHSGVNSSERYIVDNQSG 359
+N N Q N Q + T + + G+N + N
Sbjct: 334 NEQRTDNNRMRENTNG---QGGMFNRQPSLEQTTPMNKYNHVEDDGMNQRPTFYTGNSEN 390
Query: 360 HNKNSATYITKGIHVEH-NISKSTQHVTNKSLS-----DSVTKTSIEFQRAMHGGDDSTT 521
+ + +G + N +++ +++ ++S D + ++ E ++ + S +
Sbjct: 391 DQRQFDGQMQQGSQQNNQNQNQNNRNLRKNTVSRVTEEDYASSSNFESKKQRNNSSQSQS 450
Query: 522 N 524
N
Sbjct: 451 N 451
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,343,633
Number of Sequences: 27780
Number of extensions: 327915
Number of successful extensions: 1187
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 1120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1183
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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