Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_M18
         (666 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    27   0.21 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       27   0.21 
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    24   1.1  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    24   1.5  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    23   2.0  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    23   2.0  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    23   3.5  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    22   4.6  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   4.6  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   6.0  
AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex det...    21   8.0  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    21   8.0  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    21   8.0  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   8.0  

>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 26.6 bits (56), Expect = 0.21
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +3

Query: 348 NQSGHNKNSATYITKGIHVEHNISKSTQHVTNKSLSDSVTKTSIE 482
           N+S + +NS    T+  + +HN  + TQ++   S S+   KT I+
Sbjct: 370 NESENRRNSCLGSTETYYSKHNTQQFTQYIPESS-SNLQEKTKID 413


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 26.6 bits (56), Expect = 0.21
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 5/35 (14%)
 Frame = +3

Query: 69  QRHTLSQQSTQNKLVDHAV-----SQQHHQETTSE 158
           Q+H LS    Q+ +  H++      QQHHQ+++SE
Sbjct: 79  QQHILSPTQLQSFMQQHSLYLQQQQQQHHQDSSSE 113



 Score = 23.8 bits (49), Expect = 1.5
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = -2

Query: 407 FYVDSFCYICRRIFVMPTLVIHNISFAGIYTRV 309
           ++ ++FCY  R        V HN+S    + RV
Sbjct: 533 WFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRV 565


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 347 IHNISFAGIYTRVIG 303
           +H++ F G YT VIG
Sbjct: 370 VHDVEFPGXYTMVIG 384


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 12/40 (30%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = +3

Query: 216 NVNSRITQHSTSNNQD-IKQSGTHTQRVVSSDHSGVNSSE 332
           N N  ++ +S S++++ +KQ   + +  +SS  S ++SSE
Sbjct: 343 NSNQIVSDNSLSSSEEKLKQDILNLRTDISSSSSSISSSE 382


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +3

Query: 21  HDSRGSTHRHTDNSNNQRHTLSQQSTQNKLVDHA 122
           H SRG+T    DNSN    ++  QS  +   D A
Sbjct: 22  HWSRGNTWLSLDNSNMSMSSVGPQSPLDMKPDTA 55


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +3

Query: 21  HDSRGSTHRHTDNSNNQRHTLSQQSTQNKLVDHA 122
           H SRG+T    DNSN    ++  QS  +   D A
Sbjct: 22  HWSRGNTWLSLDNSNMSMSSVGPQSPLDMKPDTA 55


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 12  NSTHDSRGSTHRHTDNSNNQ 71
           N  +D++ + +R  DN NNQ
Sbjct: 508 NRQNDNKRNGNRQNDNQNNQ 527


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 12/44 (27%), Positives = 19/44 (43%)
 Frame = +3

Query: 15  STHDSRGSTHRHTDNSNNQRHTLSQQSTQNKLVDHAVSQQHHQE 146
           S HD +    R+ DN  + R    ++  Q +     V Q+  QE
Sbjct: 9   SYHDEKFKQLRNEDNKIDLRSRTKEERLQYRREAWLVQQEREQE 52


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -3

Query: 406 STWIPFVIYVAEFLLCPLWLS 344
           +TW  F +++   L C +WL+
Sbjct: 123 ATWEVFKVWIFGDLWCSIWLA 143


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 126 SQQHHQETTSESHIQ 170
           SQ HHQ  T   H+Q
Sbjct: 166 SQMHHQMHTQHPHMQ 180


>AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex
           determiner protein.
          Length = 385

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 10/44 (22%), Positives = 20/44 (45%)
 Frame = +3

Query: 15  STHDSRGSTHRHTDNSNNQRHTLSQQSTQNKLVDHAVSQQHHQE 146
           S HD +    R+ DN  + R    ++  Q++     + Q+  +E
Sbjct: 9   SHHDEKFKQLRNEDNEIDLRSRTKEERLQHRREAWLIQQERERE 52


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 10/44 (22%), Positives = 20/44 (45%)
 Frame = +3

Query: 15  STHDSRGSTHRHTDNSNNQRHTLSQQSTQNKLVDHAVSQQHHQE 146
           S HD +    R+ DN  + R    ++  Q++     + Q+  +E
Sbjct: 9   SHHDEKFKQLRNEDNKIDLRSRTKEERLQHRREAWLIQQERERE 52


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 10/44 (22%), Positives = 20/44 (45%)
 Frame = +3

Query: 15  STHDSRGSTHRHTDNSNNQRHTLSQQSTQNKLVDHAVSQQHHQE 146
           S HD +    R+ DN  + R    ++  Q++     + Q+  +E
Sbjct: 9   SYHDEKFKQLRNEDNKIDLRSRTKEERLQHRREAWLIQQERERE 52


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
 Frame = +3

Query: 3   TRVNST-HDSRGSTHRHTDNSNNQRHTL 83
           T  NS  H+S  S + HT + N    TL
Sbjct: 219 TNSNSIKHESDNSDYSHTTDENRHSSTL 246


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,591
Number of Sequences: 438
Number of extensions: 4163
Number of successful extensions: 25
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20099475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)