Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_M17
(616 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0730 - 31552747-31553088,31553583-31553646,31553743-315538... 181 3e-46
05_07_0131 + 27898028-27898042,27898159-27898274,27898361-278984... 180 1e-45
01_06_0180 - 27260099-27260440,27261236-27261350,27261403-272615... 157 7e-39
09_02_0235 + 6122145-6122206,6122408-6122417,6123515-6123549,612... 31 0.55
03_05_0920 - 28812796-28813325,28814019-28816377 31 0.96
08_02_0199 - 14160881-14161054,14161151-14161306,14161802-141619... 29 3.9
08_01_0600 - 5262573-5262773,5262850-5262952,5263050-5263180,526... 28 5.1
11_06_0007 - 19171122-19172036 28 6.8
10_01_0109 + 1338525-1338590,1338744-1339325 28 6.8
01_06_0801 - 32085110-32085274,32086318-32086365,32086441-320864... 28 6.8
04_01_0014 - 231228-233179,233522-233714 27 8.9
>01_06_0730 -
31552747-31553088,31553583-31553646,31553743-31553858,
31553964-31553978
Length = 178
Score = 181 bits (441), Expect = 3e-46
Identities = 83/170 (48%), Positives = 116/170 (68%), Gaps = 3/170 (1%)
Frame = +1
Query: 79 EYEVIGRKLPSESEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVSIKEIP 258
+Y+V+GR LP+ ++ P +Y+M++++ + + AKS+FWYFLR+LKK KK+ G+I++I EI
Sbjct: 8 QYQVVGRGLPTPTDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQILAINEIF 67
Query: 259 EKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIK 438
EK+P IKN+GIWLRY+SR+G HNMY+EYRD ++ GAV Q Y +M +RHR R IQIIK
Sbjct: 68 EKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQIIK 127
Query: 439 VEVIKAAACRRPQVKQFHTSKIGFPL---PKRVHQYKRLNTFAYKRPSTY 579
+ C+R KQFH S I FPL R K TF RP+ +
Sbjct: 128 TATVHFKLCKRDNTKQFHKSDIKFPLVYRKVRPPTRKLKTTFKASRPNLF 177
>05_07_0131 +
27898028-27898042,27898159-27898274,27898361-27898424,
27899450-27899791
Length = 178
Score = 180 bits (437), Expect = 1e-45
Identities = 81/170 (47%), Positives = 115/170 (67%), Gaps = 3/170 (1%)
Frame = +1
Query: 79 EYEVIGRKLPSESEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVSIKEIP 258
+Y+V+GR LP+ + P +Y+M++++ + + AKS+FWYFLR+LKK KK+ G++++I EI
Sbjct: 8 QYQVVGRALPTPGDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIF 67
Query: 259 EKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIK 438
E++P IKN+GIWLRY+SR+G HNMY+EYRD ++ GAV Q Y +M +RHR R IQIIK
Sbjct: 68 ERNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQIIK 127
Query: 439 VEVIKAAACRRPQVKQFHTSKIGFPL---PKRVHQYKRLNTFAYKRPSTY 579
+ C+R KQFH S I FPL R K TF RP+ +
Sbjct: 128 TATVHFKLCKRDNTKQFHNSNIKFPLVYRKVRPPTRKLKTTFKASRPNLF 177
>01_06_0180 -
27260099-27260440,27261236-27261350,27261403-27261518,
27261594-27261608
Length = 195
Score = 157 bits (381), Expect = 7e-39
Identities = 80/187 (42%), Positives = 114/187 (60%), Gaps = 20/187 (10%)
Frame = +1
Query: 79 EYEVIGRKLPSESEPKPPLYKMRIFSPDPIVAKSRF----------W-------YFLRQL 207
+Y+V+GR LP+ + P +Y+M++++ + + AKS+F W YFLR+L
Sbjct: 8 QYQVVGRALPTPGDEHPKIYRMKLWATNEVRAKSKFCSSYLVRFADWGACPVCRYFLRKL 67
Query: 208 KKFKKTTGEIVSIKEIPEKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYR 387
KK KK+ G++++I EI E++P IKN+GIWLRY+SR+G HNMY+EYRD ++ GAV Q Y
Sbjct: 68 KKVKKSNGQMLAINEIFERNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYT 127
Query: 388 DMGARHRARAHSIQIIKVEVIKAAACRRPQVKQFHTSKIGFPL---PKRVHQYKRLNTFA 558
+M +RHR R IQIIK + C+R KQFH I FPL R K TF
Sbjct: 128 EMASRHRVRFPCIQIIKTATVHFKLCKRDNTKQFHNGSIKFPLVYRKVRPPTRKLKTTFK 187
Query: 559 YKRPSTY 579
RP+ +
Sbjct: 188 ASRPNLF 194
>09_02_0235 +
6122145-6122206,6122408-6122417,6123515-6123549,
6124422-6124842,6124978-6125412
Length = 320
Score = 31.5 bits (68), Expect = 0.55
Identities = 18/57 (31%), Positives = 30/57 (52%)
Frame = -2
Query: 354 QVTVFTVHIVDTRARLVTQPDTKVLNLNRTLFWNFLDGYNFTSSLFELLQLPQEIPE 184
+++ F V I +L+ P+T VLNL + +F+ T+ L E L +P+ I E
Sbjct: 185 EISDFDVLIGHPIEKLIDVPETGVLNLKIEIIISFVPVLQSTNCLMEPLPIPEPIKE 241
>03_05_0920 - 28812796-28813325,28814019-28816377
Length = 962
Score = 30.7 bits (66), Expect = 0.96
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = -3
Query: 143 ILYRGGFGSLSEGSLRPMTSYSFNSPFAFILGVLGIKELSMEI 15
+L RGGFG++ +G L T + A ++G G+ E EI
Sbjct: 612 VLGRGGFGTVYKGELHDGTKIAVKRMEAGVMGNKGLNEFKSEI 654
>08_02_0199 -
14160881-14161054,14161151-14161306,14161802-14161921,
14162046-14162143,14162969-14163041,14164472-14164619,
14165108-14165232,14165611-14165652,14165757-14166074,
14166633-14167559,14167584-14167852,14167946-14168255,
14169281-14169465,14170795-14170901,14171320-14171486
Length = 1072
Score = 28.7 bits (61), Expect = 3.9
Identities = 15/51 (29%), Positives = 27/51 (52%)
Frame = +1
Query: 13 PISIDSSFIPKTPKMKAKGELKEYEVIGRKLPSESEPKPPLYKMRIFSPDP 165
P S + K P ++ KG+++ ++I RKL +P PL + + S +P
Sbjct: 353 PWLFQSKVVAKKPVVQTKGKIEAKDII-RKLRKMDKPPAPLEEDKATSGEP 402
>08_01_0600 -
5262573-5262773,5262850-5262952,5263050-5263180,
5263263-5263312,5265266-5265725,5266349-5266708
Length = 434
Score = 28.3 bits (60), Expect = 5.1
Identities = 16/69 (23%), Positives = 33/69 (47%)
Frame = +1
Query: 181 RFWYFLRQLKKFKKTTGEIVSIKEIPEKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSV 360
++W + TGE+ S+K I +K +++ +G ++ + S +G + + Y +
Sbjct: 103 QYWMDENYISACFAPTGELQSVKLIRDKQTGQLQGYG-FIEFTSHAGAERVLQTYNGAMM 161
Query: 361 GGAVTQCYR 387
V Q YR
Sbjct: 162 PN-VEQTYR 169
>11_06_0007 - 19171122-19172036
Length = 304
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/38 (34%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Frame = -3
Query: 491 WNCLTCGRRHAAALITST--LMICIECARALCLAPISL 384
W C CG R AA L+ L +C C P+ L
Sbjct: 252 WGCKACGEREAAVLLLPCRHLCLCRACEARAEACPVCL 289
>10_01_0109 + 1338525-1338590,1338744-1339325
Length = 215
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 25 DSSFIPKTPKMKAKGELKEYEVIGRKLPSESEP 123
DS+F+ ++K KGE + + I LP E EP
Sbjct: 38 DSAFVMVNGRLKRKGEREHSDPILPYLPDEDEP 70
>01_06_0801 -
32085110-32085274,32086318-32086365,32086441-32086483,
32086588-32086651,32086740-32086792,32086899-32086937,
32087031-32087113,32087200-32087280
Length = 191
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -3
Query: 533 W*TRFGSGKPILLVWNCLTCGRRHAAALITSTLMICIECARAL 405
W R+G KPI+ C CG+R+ + +C C++ L
Sbjct: 52 WKRRYGKYKPIVEPAKCQKCGKRNVRQAYHN---VCTACSKDL 91
>04_01_0014 - 231228-233179,233522-233714
Length = 714
Score = 27.5 bits (58), Expect = 8.9
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = -3
Query: 194 KYQKRDFATIGSGEKILILYRGGFGSLSEGSLRPMT 87
+Y D AT EK L GGFGS+ +G LR +T
Sbjct: 407 RYSDLDHATKNFSEK---LGEGGFGSVFKGVLRDLT 439
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,403,265
Number of Sequences: 37544
Number of extensions: 338881
Number of successful extensions: 986
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 959
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 986
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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