Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_M17
         (616 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038611-9|AAB92041.2|  180|Caenorhabditis elegans Ribosomal pro...   225   2e-59
Z78417-5|CAB01686.1| 1224|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z69787-6|CAA93637.1|  341|Caenorhabditis elegans Hypothetical pr...    28   4.6  
U58727-1|AAB00581.1|  358|Caenorhabditis elegans Hypothetical pr...    28   4.6  
Z49068-1|CAA88854.2|  499|Caenorhabditis elegans Hypothetical pr...    28   6.1  
U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical pr...    28   6.1  

>AF038611-9|AAB92041.2|  180|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 20 protein.
          Length = 180

 Score =  225 bits (550), Expect = 2e-59
 Identities = 100/176 (56%), Positives = 135/176 (76%), Gaps = 1/176 (0%)
 Frame = +1

Query: 58  KAKGE-LKEYEVIGRKLPSESEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGE 234
           KA GE L EY V+GRK+P+E EP  P++KM+IF+ + ++AKSRFWYF+  L++ KK  GE
Sbjct: 4   KALGETLNEYVVVGRKIPTEKEPVTPIWKMQIFATNHVIAKSRFWYFVSMLRRVKKANGE 63

Query: 235 IVSIKEIPEKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRAR 414
           I+SIK++ EK+P  +KN+G+WL+Y+SR+G HNMYREYRD +V GAVTQCYRDMGARHRA+
Sbjct: 64  ILSIKQVFEKNPGTVKNYGVWLKYDSRTGHHNMYREYRDTTVAGAVTQCYRDMGARHRAQ 123

Query: 415 AHSIQIIKVEVIKAAACRRPQVKQFHTSKIGFPLPKRVHQYKRLNTFAYKRPSTYF 582
           A  I I+KV+ +KA   +R  +K FH +KI FPLP RV + K L+ F   R +T+F
Sbjct: 124 ADRIHILKVQTVKAEDTKRAGIKMFHDAKIRFPLPHRVTKRKNLSVFTTARQNTHF 179


>Z78417-5|CAB01686.1| 1224|Caenorhabditis elegans Hypothetical protein
            C35C5.6 protein.
          Length = 1224

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -3

Query: 266  LFSGISLM-DTISPVVFLNFFNCLKKYQKRDFATIGSGEKILI 141
            L S +SL+   + P + L+FF   K+Y   D  T+G G+ + +
Sbjct: 1080 LLSSVSLLKQLVLPAISLDFFVNGKQYVSEDDVTVGIGQFVTV 1122


>Z69787-6|CAA93637.1|  341|Caenorhabditis elegans Hypothetical
           protein C44C10.7 protein.
          Length = 341

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +1

Query: 229 GEIVSIKEIPEKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGG 366
           G I+    +   +PVKI +FGI  R+ +R G H +    RD+   G
Sbjct: 184 GNILFASRLTPTAPVKIVDFGIGRRFANRRG-HPIPSPSRDIDFLG 228


>U58727-1|AAB00581.1|  358|Caenorhabditis elegans Hypothetical
           protein D1005.3 protein.
          Length = 358

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
 Frame = +1

Query: 25  DSSFIPKTPKMKAKGELKEYEVIGR----KLPSESEPKPPLYKMRIFSPDPIVAKSR 183
           DS F PK+ K K+ G L+ ++   R    KL ++ E   P YK++    +  V KSR
Sbjct: 235 DSYFEPKSKKTKSAG-LENFKPQTRARKYKLKADEEKAEPTYKLKRARNNDAVRKSR 290


>Z49068-1|CAA88854.2|  499|Caenorhabditis elegans Hypothetical
           protein K01C8.1 protein.
          Length = 499

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = +1

Query: 370 VTQCYRDMGARHRARAHSIQIIKVEVIKAAACRRPQVKQFHTSKIGFPL 516
           VT  +++ GAR+     + Q  K  VI A+A        +H  ++G P+
Sbjct: 143 VTGSFKERGARYALSKMAEQFKKAGVIAASAGNHALALSYHGQQMGIPV 191


>U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical
           protein C25H3.8 protein.
          Length = 2148

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 21/82 (25%), Positives = 35/82 (42%)
 Frame = +1

Query: 4   RGFPISIDSSFIPKTPKMKAKGELKEYEVIGRKLPSESEPKPPLYKMRIFSPDPIVAKSR 183
           R FP S+ S+ IP      A   LK+    G ++ +        +  RIF  +P++ + +
Sbjct: 662 RIFPESVPSNSIPLLRLSVAHVCLKK---TGERIIASFHVSMDYFNQRIFGWEPVIEEWK 718

Query: 184 FWYFLRQLKKFKKTTGEIVSIK 249
              FL   K  K+T   +   K
Sbjct: 719 ILRFLHNKKDLKQTIEWVAETK 740


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,267,241
Number of Sequences: 27780
Number of extensions: 298537
Number of successful extensions: 906
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 874
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 905
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)