Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_M15
         (794 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287...    28   9.8  

>05_01_0367 -
           2874429-2874483,2876274-2876345,2876453-2879613,
           2879715-2879973,2880060-2880346,2880423-2880758,
           2880862-2881003,2881077-2881297,2881379-2881540,
           2881617-2881775,2881860-2882159,2882834-2883097,
           2883133-2883243,2883902-2883988
          Length = 1871

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = +1

Query: 256 DITFKELLKIKQFKEKLK*AYD 321
           DI FK+ LKI+  K KLK  YD
Sbjct: 156 DIKFKQALKIRNPKNKLKRIYD 177


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,356,073
Number of Sequences: 37544
Number of extensions: 196242
Number of successful extensions: 310
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 307
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 310
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)