Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_M15
         (794 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81041-11|CAJ90515.1|  713|Caenorhabditis elegans Hypothetical p...    33   0.31 
Z81041-10|CAB02785.3|  743|Caenorhabditis elegans Hypothetical p...    33   0.31 
Z70684-11|CAA94604.1| 1141|Caenorhabditis elegans Hypothetical p...    29   3.8  
Z70682-10|CAA94588.1| 1141|Caenorhabditis elegans Hypothetical p...    29   3.8  
AB073210-1|BAB70473.1| 1141|Caenorhabditis elegans rac effector ...    29   3.8  
AF100661-4|AAC68973.1|  481|Caenorhabditis elegans Hypothetical ...    28   6.7  
Z82282-8|CAB05278.1|  575|Caenorhabditis elegans Hypothetical pr...    28   8.9  
AC006794-2|AAK68505.2|  622|Caenorhabditis elegans Hypothetical ...    28   8.9  

>Z81041-11|CAJ90515.1|  713|Caenorhabditis elegans Hypothetical
           protein C27A7.3b protein.
          Length = 713

 Score = 32.7 bits (71), Expect = 0.31
 Identities = 19/53 (35%), Positives = 29/53 (54%)
 Frame = -1

Query: 365 LINKQNTRLLRKNI*S*AYFSFSLNCFIFNNSLNVISNYYTIKDKKNCQKFNF 207
           LI  +N + +RK +     FSFS N  +F NS + ++  Y+I+  K   K NF
Sbjct: 482 LIIHKNRQDVRKGVIESLTFSFSRNQSVFENSFSFVNTKYSIECPKLDTKDNF 534


>Z81041-10|CAB02785.3|  743|Caenorhabditis elegans Hypothetical
           protein C27A7.3a protein.
          Length = 743

 Score = 32.7 bits (71), Expect = 0.31
 Identities = 19/53 (35%), Positives = 29/53 (54%)
 Frame = -1

Query: 365 LINKQNTRLLRKNI*S*AYFSFSLNCFIFNNSLNVISNYYTIKDKKNCQKFNF 207
           LI  +N + +RK +     FSFS N  +F NS + ++  Y+I+  K   K NF
Sbjct: 512 LIIHKNRQDVRKGVIESLTFSFSRNQSVFENSFSFVNTKYSIECPKLDTKDNF 564


>Z70684-11|CAA94604.1| 1141|Caenorhabditis elegans Hypothetical
           protein F28D1.10 protein.
          Length = 1141

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 448 YKNIVLKHWLSCTQLITRASLLLKF 374
           Y  +  KHWL+C QL  +A  +L F
Sbjct: 542 YPKLAEKHWLNCLQLPAQARYVLSF 566


>Z70682-10|CAA94588.1| 1141|Caenorhabditis elegans Hypothetical
           protein F28D1.10 protein.
          Length = 1141

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 448 YKNIVLKHWLSCTQLITRASLLLKF 374
           Y  +  KHWL+C QL  +A  +L F
Sbjct: 542 YPKLAEKHWLNCLQLPAQARYVLSF 566


>AB073210-1|BAB70473.1| 1141|Caenorhabditis elegans rac effector
           protein.
          Length = 1141

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 448 YKNIVLKHWLSCTQLITRASLLLKF 374
           Y  +  KHWL+C QL  +A  +L F
Sbjct: 542 YPKLAEKHWLNCLQLPAQARYVLSF 566


>AF100661-4|AAC68973.1|  481|Caenorhabditis elegans Hypothetical
           protein H20E11.1a protein.
          Length = 481

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
 Frame = -1

Query: 311 YFSFSL-NCFI-FNNSLNVISNYYTIKDKKN 225
           YFS  + NC + FN S  + SNYYTI  ++N
Sbjct: 329 YFSIIVENCDVNFNFSTTLPSNYYTIDSERN 359


>Z82282-8|CAB05278.1|  575|Caenorhabditis elegans Hypothetical
           protein T07G12.11 protein.
          Length = 575

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 15/53 (28%), Positives = 22/53 (41%)
 Frame = -1

Query: 683 HFNSKNTLCNTCSYFFYGKLHLLSLHYVYTHTFA*CEGHXGREI*NSRYSETA 525
           H N K  +C TC Y        +  HY   H    C+G   +++ N  + E A
Sbjct: 469 HENEKCLVCRTCEY-SCSTHPQMKYHYQKMHPEVRCDGFNIQKVFNIEFDEVA 520


>AC006794-2|AAK68505.2|  622|Caenorhabditis elegans Hypothetical
           protein Y50D4A.4 protein.
          Length = 622

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +2

Query: 584 RKCAYKRNVKTIDVIFRKKNKSMYCIKCS*N 676
           R CA +R   T DV+F +K ++  C++ + N
Sbjct: 40  RLCAMQRTPTTADVVFLEKTETSLCLELTVN 70


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,187,483
Number of Sequences: 27780
Number of extensions: 224469
Number of successful extensions: 497
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 497
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)