Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_M14
         (634 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    28   0.97 
SPAPB24D3.03 |||agmatinase |Schizosaccharomyces pombe|chr 1|||Ma...    28   0.97 
SPBC2G2.07c |mug178||mitochondrial ribosomal protein subunit L51...    26   5.2  
SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1 |Schiz...    26   5.2  
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    25   6.9  
SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr 2...    25   9.1  
SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr ...    25   9.1  
SPAC15E1.10 ||SPAP7G5.01|PI31 proteasome regulator related|Schiz...    25   9.1  

>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
           Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 28.3 bits (60), Expect = 0.97
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +1

Query: 19  KNNYMLITLRLXLLAVFEHWYPVYAWL 99
           ++NY L+  +L LLAV +H   V AWL
Sbjct: 725 RDNYKLLWTQLDLLAVTDHPLRVCAWL 751


>SPAPB24D3.03 |||agmatinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 385

 Score = 28.3 bits (60), Expect = 0.97
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = +3

Query: 135 DPFKSTKYLVDCGTQDAINYNQLYLREVLTPEIFSTVLGAPRS 263
           +PFKS   LVDCG      Y+ L   + L    F  +   P S
Sbjct: 109 NPFKSWAKLVDCGDIPVTTYDILKAMDQLESAYFQLIARKPSS 151


>SPBC2G2.07c |mug178||mitochondrial ribosomal protein subunit
           L51-b|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 225

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -3

Query: 602 KYCFFGTSGVVIAVAVPSAIKLKCDLKLKYLNI 504
           K C FG SGV+ A ++      K    ++ LN+
Sbjct: 176 KECLFGVSGVIAATSLKGITSTKNRYVIRSLNV 208


>SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 676

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +1

Query: 529 SHFSFIALGTATAITTPEVPKKQYFTIYFAL 621
           SH + +A+ TA     PEV  K Y   Y  L
Sbjct: 260 SHKNMVAIVTAIVKHVPEVTSKDYLLAYLPL 290


>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 9/23 (39%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
 Frame = +1

Query: 226 LKSSAPSWEPLDLVT-RSSPIPD 291
           ++++AP WEP+D  +   SP+P+
Sbjct: 919 VEANAPPWEPIDFSSLLESPVPN 941


>SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 411

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 14/21 (66%), Positives = 14/21 (66%)
 Frame = -1

Query: 298 TTDPVSVTIL*QDLGAPKTVL 236
           T DPV VTIL   LGA KT L
Sbjct: 57  TLDPVPVTILTGFLGAGKTSL 77


>SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 551

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 484 NNRVKIVIFRYLSLRSHFSFIALGTAT 564
           NNR  +V+  YL L+ +    ALG  T
Sbjct: 384 NNRRGLVVDEYLKLKGYKDIFALGDCT 410


>SPAC15E1.10 ||SPAP7G5.01|PI31 proteasome regulator
           related|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 265

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 10/40 (25%), Positives = 20/40 (50%)
 Frame = +3

Query: 258 RSCHKIVTDTGSVVRTCLDVNPADLNHTCRLMEKNSKVKY 377
           + CHK + +TG++ + C   N   L      + ++S+  Y
Sbjct: 14  QKCHKSMLNTGAIFKNCKLRNGDVLQEVTESLTEDSEFNY 53


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,640,930
Number of Sequences: 5004
Number of extensions: 53563
Number of successful extensions: 136
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)