Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_M14
         (634 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1436 - 26543846-26546806                                         28   5.4  
02_05_1123 + 34275272-34275331,34275451-34275523,34275631-342757...    28   7.1  
02_01_0707 - 5276963-5278396,5280163-5280248,5280634-5281011,528...    28   7.1  
08_02_0665 + 19818500-19819013,19819169-19819260,19819435-198200...    27   9.4  

>07_03_1436 - 26543846-26546806
          Length = 986

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 363  SKVKYCSVCDKDSCNGAGTTSVSIPLATLALIIT 464
            S VK    CDK+SC  A T  +++    + L +T
Sbjct: 908  SDVKQAVTCDKESCEMAQTREITLAREEIRLAVT 941


>02_05_1123 +
           34275272-34275331,34275451-34275523,34275631-34275728,
           34276012-34276153,34276261-34276361,34276633-34276716,
           34276949-34277014,34277102-34277167,34277324-34277404,
           34277489-34277566,34277687-34277848,34277936-34278011,
           34278111-34278223,34278323-34278751
          Length = 542

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +1

Query: 175 PKTLSITTSSTFVKS*PLKSSAPSWEPLDLVTRSSPIPDQS 297
           P  +S + S    +  P+K  +P  EP DL+  + P PD S
Sbjct: 307 PPPVSTSESEPEPEPEPVKEVSPVHEPTDLLGMNEPTPDVS 347


>02_01_0707 -
           5276963-5278396,5280163-5280248,5280634-5281011,
           5281453-5281690,5281787-5282052,5282148-5282526
          Length = 926

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 14/65 (21%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
 Frame = -1

Query: 454 SAKVASGIETDVVPAPLQL---SLSHTLQYLTLEFFSIKRHVWFKSAGFTSRQVRTTDPV 284
           S+  ++ I   V+P  +++   +  H L++   E F   R  WF+   F  + +   +P+
Sbjct: 384 SSSTSTNIVGGVIPRLVRMIEDTTDHVLRFDVPEMFERDRFSWFRDEEFARQVLAGVNPI 443

Query: 283 SVTIL 269
            + +L
Sbjct: 444 CIQLL 448


>08_02_0665 +
           19818500-19819013,19819169-19819260,19819435-19820056,
           19820575-19820775,19821327-19821395,19821428-19821522,
           19821608-19822153
          Length = 712

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
 Frame = +3

Query: 255 PRSCHKIVTDTGSVVRTCLDVNPADLNHTCRLMEKNS--KVKYCSVCDKDSC--NGAGTT 422
           P+ C  +VTD G+ +   +++   D     + +  +S  K+   ++C   +   +G GTT
Sbjct: 445 PKMCALLVTDRGNRLIRQINLKQEDCARETQPVNNSSFSKMSLQNMCSVPAQLQDGLGTT 504

Query: 423 SVSIPLATLALI 458
           SVSI     AL+
Sbjct: 505 SVSIIAVLCALL 516


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,182,632
Number of Sequences: 37544
Number of extensions: 357662
Number of successful extensions: 799
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 799
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)