Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_M13
         (565 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        26   3.3  
SPBC1347.04 |tim54||TIM22 inner membrane protein import complex ...    26   3.3  
SPAC13A11.03 |mcp7|mug32|meiosis specific coiled-coil protein Mc...    25   7.7  

>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 244  EENVSEKVEERDSGTESDDEADR 312
            EENV E  E  + G +SD+E ++
Sbjct: 4166 EENVQENEESTEDGVKSDEELEQ 4188


>SPBC1347.04 |tim54||TIM22 inner membrane protein import complex
           subunit Tim54|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 347

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = +1

Query: 211 LTQKLRTHSLNEENVSEKVEERDSGTESDDEADRVHSGDFYTDVIMKWNDV 363
           + +KL T  L   N  EK EE++   + DD+ D   S D   D  +  N+V
Sbjct: 170 MKRKLETEKLEANNKEEK-EEKEGKDDKDDKED---SNDTKNDKKISKNEV 216


>SPAC13A11.03 |mcp7|mug32|meiosis specific coiled-coil protein
           Mcp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = +1

Query: 157 SECRETRRPSGGSIMLKFLTQKLRTHSLNEENVSEKVEERDSGTESD 297
           S+ + +R    GS+  +    K ++ +L+E    EK +  + GTE+D
Sbjct: 74  SDAKRSRESVLGSLQAQLDDLKQKSKTLDENISFEKSKRDNEGTEND 120


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,007,184
Number of Sequences: 5004
Number of extensions: 35619
Number of successful extensions: 115
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)