Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_M13
(565 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0898 - 32610635-32610975,32611139-32611208 33 0.16
10_07_0138 + 13325418-13325954 30 1.1
04_04_1250 + 32077590-32078000,32078132-32078308,32078437-320785... 30 1.1
04_04_0137 - 23053148-23053798,23053911-23054146,23054268-230544... 30 1.1
12_02_0973 + 24959440-24959451,24959962-24962195,24962539-249626... 30 1.5
11_06_0561 - 24984960-24985205,24985283-24985354,24985906-249859... 29 1.9
03_05_1085 + 30275567-30276178,30277024-30278680,30278835-30278968 29 1.9
01_01_1071 - 8446761-8447440,8449334-8450489 29 1.9
12_01_0752 - 6798938-6799312,6799628-6799768,6800257-6800325,680... 29 3.4
10_08_0092 - 14752397-14752867 29 3.4
03_02_0740 - 10836752-10837052,10837756-10837814,10837901-108384... 29 3.4
01_02_0111 - 11220179-11220322,11220430-11220497,11220611-112206... 29 3.4
03_05_1144 + 30719953-30720456 28 4.5
02_03_0027 + 14065720-14066328 28 4.5
09_02_0341 - 7458214-7458522 28 5.9
07_03_0776 + 21417476-21417691,21417775-21417855,21417941-214183... 28 5.9
03_06_0518 - 34474776-34474865,34475168-34475437,34475536-344758... 28 5.9
02_04_0232 + 21130122-21130454,21130895-21131053,21131424-211315... 28 5.9
01_01_1204 + 9689855-9690844 27 7.8
>02_05_0898 - 32610635-32610975,32611139-32611208
Length = 136
Score = 33.1 bits (72), Expect = 0.16
Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 9/61 (14%)
Frame = +1
Query: 382 GEACACEPEPARRLPDPEPDHLYDH---------HSSEEELEVINGVPSGACGAGSAVGP 534
GE C + E P+ DHL +H EEE+EV+ V +G A A GP
Sbjct: 44 GEGCGADAEGGEVRPEVNGDHLQEHALQQLHLQVDGKEEEVEVLEQVVAGV-AAAEAPGP 102
Query: 535 P 537
P
Sbjct: 103 P 103
>10_07_0138 + 13325418-13325954
Length = 178
Score = 30.3 bits (65), Expect = 1.1
Identities = 14/27 (51%), Positives = 14/27 (51%)
Frame = +3
Query: 468 RRIRGDQRRAERRMWRGLRCGTSWRRL 548
RR R R RR WR RC WRRL
Sbjct: 95 RRWRSRCSRRWRRSWRRRRCSRRWRRL 121
>04_04_1250 +
32077590-32078000,32078132-32078308,32078437-32078561,
32078629-32078761,32078866-32079015,32079105-32079158,
32079437-32079532,32080021-32080095,32080723-32080824,
32080903-32081589,32081686-32081817,32081916-32082023,
32082170-32082319
Length = 799
Score = 30.3 bits (65), Expect = 1.1
Identities = 10/28 (35%), Positives = 22/28 (78%)
Frame = +1
Query: 229 THSLNEENVSEKVEERDSGTESDDEADR 312
+ S ++E +SEK+++ D G++ DD++D+
Sbjct: 578 SESDDDEELSEKLDDSDEGSDQDDDSDQ 605
>04_04_0137 -
23053148-23053798,23053911-23054146,23054268-23054458,
23054587-23056010
Length = 833
Score = 30.3 bits (65), Expect = 1.1
Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Frame = +1
Query: 262 KVEERDSGTE-SDDEADRVHSGDFYTDVIMKWNDVTDISMGGEACACEPEPARRLPDPEP 438
+ EE DSG SDD AD VHS + ++++ D G + P R P
Sbjct: 221 RCEEEDSGVALSDDGADSVHSSCCFHSSHFSYSELRDTKPGSNGVSPSPSGRSRRRSSAP 280
>12_02_0973 +
24959440-24959451,24959962-24962195,24962539-24962653,
24963146-24963943,24964140-24964422,24964500-24964951,
24965744-24965870,24965950-24966074,24966188-24966858,
24966976-24967093,24967177-24967293,24967564-24967658,
24968152-24968303,24968858-24968913,24969001-24969218,
24969842-24970239,24970345-24970628,24970730-24970836,
24970882-24970968,24971729-24971990,24972228-24972503,
24973197-24973254,24973437-24973756,24973889-24973999,
24974183-24974350,24974494-24974622,24974731-24974820,
24974934-24975040,24975133-24975281,24975584-24975666,
24975749-24975844,24975957-24976079,24976180-24976263,
24976371-24976511,24976652-24976951,24977386-24977453,
24977540-24977642,24979363-24979524,24979613-24981230,
24981270-24981661,24981689-24981991,24982078-24982161,
24982296-24982448,24982678-24982841,24982915-24983062,
24983209-24983331,24983409-24983496,24983686-24983867
Length = 4177
Score = 29.9 bits (64), Expect = 1.5
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +1
Query: 202 LKFLTQKLRTHSLNEENVSEKVEER-DSGTESDDEADRVHSGDFYTDVIMKWNDVT 366
L LTQK H+ + + VEE+ +S + D A V+SG D K+ D+T
Sbjct: 666 LSSLTQKADLHAKESHDTFDGVEEQLESHRLALDSAGHVYSGTVVLDSCFKFADLT 721
>11_06_0561 -
24984960-24985205,24985283-24985354,24985906-24985977,
24986612-24986782,24987464-24987653,24987733-24987976,
24988162-24988474,24988687-24989517,24989628-24989672,
24989677-24989790,24989877-24990371,24990627-24990824,
24990902-24991357
Length = 1148
Score = 29.5 bits (63), Expect = 1.9
Identities = 15/27 (55%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = -3
Query: 563 RDSPAQSTPGGP-TAEPAPHAPLGTPL 486
R PAQS PGGP TA+ +P A T L
Sbjct: 127 RTVPAQSAPGGPATAQSSPRAATTTKL 153
>03_05_1085 + 30275567-30276178,30277024-30278680,30278835-30278968
Length = 800
Score = 29.5 bits (63), Expect = 1.9
Identities = 20/53 (37%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Frame = +1
Query: 391 CACEPEPARRL--PDPEPDHLYDHHSSEEELEVINGVPSGACGAGSAVGPPGV 543
C P RL PD P L+ HSS E +P A AG GPP V
Sbjct: 89 CGASANPFPRLLAPDALPAELFPTHSSVE-----YALPPDAAEAGGGPGPPSV 136
>01_01_1071 - 8446761-8447440,8449334-8450489
Length = 611
Score = 29.5 bits (63), Expect = 1.9
Identities = 13/40 (32%), Positives = 16/40 (40%)
Frame = +1
Query: 415 RRLPDPEPDHLYDHHSSEEELEVINGVPSGACGAGSAVGP 534
++L D P H + HH NG GA G GP
Sbjct: 226 KKLRDITPQHQHQHHHHPGNNNNKNGTADGAAAGGDDTGP 265
>12_01_0752 -
6798938-6799312,6799628-6799768,6800257-6800325,
6800407-6800454,6801740-6801836,6801922-6802001,
6802099-6802170,6802335-6802429,6802853-6802934,
6805476-6805853
Length = 478
Score = 28.7 bits (61), Expect = 3.4
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +1
Query: 355 NDVTDISMGGEACACEPEPARRLPDPEPDHLYDHHSSEEE 474
N D+S ++ + E +L D PDHL+D S+++E
Sbjct: 324 NGEEDVSTSNQSNEKQLEEPSQLSDMLPDHLFDDSSNDKE 363
>10_08_0092 - 14752397-14752867
Length = 156
Score = 28.7 bits (61), Expect = 3.4
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +1
Query: 199 MLKFLTQKLRTHSLNE-ENVSEKVEERDSGTESDDEADRVHSGDFYTD 339
+ K L + T SL E E+ E +RD + + EAD VH D+ D
Sbjct: 5 VFKSLLTFIYTDSLPELEDEEETESDRDEEEDQESEADGVHGEDYDDD 52
>03_02_0740 -
10836752-10837052,10837756-10837814,10837901-10838476,
10839965-10841686,10841776-10842173,10842264-10842318,
10842989-10843048,10843444-10843540,10844885-10844955,
10845029-10845109,10846054-10846124,10847951-10848119,
10848521-10848683,10848752-10848942,10849037-10849168
Length = 1381
Score = 28.7 bits (61), Expect = 3.4
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Frame = +1
Query: 400 EPEPARRLPDPEPDHLYD---HHSSEEELEVINGVPSGA 507
E EP + + D YD HSSE E E +NG SGA
Sbjct: 430 ELEPENEVISDDTDSEYDGLDEHSSEGEHEALNGDSSGA 468
>01_02_0111 -
11220179-11220322,11220430-11220497,11220611-11220644,
11220735-11220766,11220900-11220959,11221276-11221729
Length = 263
Score = 28.7 bits (61), Expect = 3.4
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = -3
Query: 563 RDSPAQSTPGGPTAEPAPHAPLGT 492
R SP + TP G PAP LGT
Sbjct: 9 RPSPRRKTPWGAAPSPAPRGELGT 32
>03_05_1144 + 30719953-30720456
Length = 167
Score = 28.3 bits (60), Expect = 4.5
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +1
Query: 466 EEELEVINGVPSGACGAGSAVGPPGVDCA 552
EEE+E P CG G A G +CA
Sbjct: 6 EEEVEEDEARPRPGCGGGEAAGQAAANCA 34
>02_03_0027 + 14065720-14066328
Length = 202
Score = 28.3 bits (60), Expect = 4.5
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = +3
Query: 462 FGRRIRGDQRRAERRMWRGLRCGTSWRRLRG 554
FG + G R RR WRG T RR RG
Sbjct: 118 FGEAMEGVGRDRRRRRWRGKGATTMVRRRRG 148
>09_02_0341 - 7458214-7458522
Length = 102
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +1
Query: 355 NDVTDISMGGEACACEPEPARRLPDPEPDHLYDHHSSEEELEVINGV 495
+D+ IS G+A E A +P+P+ D + D ++ + +GV
Sbjct: 41 SDIKGIS--GDATVIEEARAASMPEPDDDDIPDEEDESDDTYIADGV 85
>07_03_0776 +
21417476-21417691,21417775-21417855,21417941-21418342,
21418457-21418621,21418729-21419460,21419542-21419748
Length = 600
Score = 27.9 bits (59), Expect = 5.9
Identities = 18/45 (40%), Positives = 21/45 (46%)
Frame = +1
Query: 364 TDISMGGEACACEPEPARRLPDPEPDHLYDHHSSEEELEVINGVP 498
T S+ A A E E A LP+P P L EEE + N VP
Sbjct: 51 TAASLRVRAIAAESEQASPLPEPPP--LLTEEEEEEEKMLANYVP 93
>03_06_0518 -
34474776-34474865,34475168-34475437,34475536-34475831,
34475924-34476013,34476172-34476337,34476399-34476679,
34476881-34477217
Length = 509
Score = 27.9 bits (59), Expect = 5.9
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = -2
Query: 84 EWFQKHFNHKHIHVLTDRFGTRSLLSS 4
+W + FNH H ++T + R +LS+
Sbjct: 477 DWVKVEFNHNHSKLITANYSLRPILSA 503
>02_04_0232 +
21130122-21130454,21130895-21131053,21131424-21131582,
21132420-21132512,21133321-21133437,21133623-21133697,
21133878-21134104,21134200-21135073
Length = 678
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +1
Query: 244 EENVSEKVEERDSGTESDDEADRVHSGDFYTDVIMKWNDVT 366
E++ E ++ +GTE DDE + V G ++I + N++T
Sbjct: 106 EDSSREYKDDHGNGTEEDDEWEYVEDGP--AEIIWEGNEIT 144
>01_01_1204 + 9689855-9690844
Length = 329
Score = 27.5 bits (58), Expect = 7.8
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +1
Query: 448 YDHHSSEEELEVINGVPSGACGAGSAVGPPGVD 546
Y H EE+E GV +G GA S+V P +D
Sbjct: 36 YCHSGFVEEIESARGVATGGGGAISSVWAPIID 68
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,285,245
Number of Sequences: 37544
Number of extensions: 288427
Number of successful extensions: 1326
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1323
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -