Samia BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_M13
         (565 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090816-1|BAC57907.1|  455|Anopheles gambiae gag-like protein p...    25   2.3  
AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha ...    23   6.9  
AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.    23   9.1  

>AB090816-1|BAC57907.1|  455|Anopheles gambiae gag-like protein
           protein.
          Length = 455

 Score = 24.6 bits (51), Expect = 2.3
 Identities = 11/45 (24%), Positives = 23/45 (51%)
 Frame = +1

Query: 211 LTQKLRTHSLNEENVSEKVEERDSGTESDDEADRVHSGDFYTDVI 345
           + +KLR    + +   E+   R+   ++D+E  RV   + +T +I
Sbjct: 66  MEEKLREQREDAQRREEEARRREEAAKADNEKLRVEQQETHTTLI 110


>AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha 1
           chain protein.
          Length = 1024

 Score = 23.0 bits (47), Expect = 6.9
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = -3

Query: 533 GPTAEPAPHAPLGTP 489
           GP  EP P  P G P
Sbjct: 158 GPKGEPGPKGPAGHP 172


>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
          Length = 1133

 Score = 22.6 bits (46), Expect = 9.1
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +2

Query: 395 PVNQSQRDVCQTLNPTTFMITTLRKKN 475
           P    ++DVC+T    TF + T    N
Sbjct: 27  PAGSERKDVCKTGYEPTFFLRTFDLNN 53


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 529,944
Number of Sequences: 2352
Number of extensions: 9643
Number of successful extensions: 34
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 52983882
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)