Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_M13
         (565 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48795-7|CAA88731.1|  347|Caenorhabditis elegans Hypothetical pr...    28   4.0  
U41011-8|AAA82291.2|  321|Caenorhabditis elegans Collagen protei...    28   4.0  
Z83122-10|CAB05601.1|  896|Caenorhabditis elegans Hypothetical p...    28   5.3  
Z83122-9|CAB05598.1|  906|Caenorhabditis elegans Hypothetical pr...    28   5.3  
Z68300-2|CAA92616.2|  440|Caenorhabditis elegans Hypothetical pr...    28   5.3  
Z81491-4|CAB04017.1|  252|Caenorhabditis elegans Hypothetical pr...    27   7.0  
AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical ...    27   7.0  
AL117202-20|CAB57898.4| 1205|Caenorhabditis elegans Hypothetical...    27   9.3  

>Z48795-7|CAA88731.1|  347|Caenorhabditis elegans Hypothetical
           protein R05H5.1 protein.
          Length = 347

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +2

Query: 26  PNRSVNTWICL*LKCFWNHSHRRRSRIYRFSFVYKIIRINTGSEVSAE 169
           P + V+ W C    CF  H+      I   SF+Y+  R+ TG   +A+
Sbjct: 96  PCKYVSPWFCYFCHCFMCHALAHSQWILLGSFIYR-YRVLTGETPTAK 142


>U41011-8|AAA82291.2|  321|Caenorhabditis elegans Collagen protein
           114 protein.
          Length = 321

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -3

Query: 554 PAQSTPGGPTAEPAPHAPLGTP 489
           P ++ P GP  EP P  P G P
Sbjct: 192 PGRNGPDGPNGEPGPKGPPGQP 213


>Z83122-10|CAB05601.1|  896|Caenorhabditis elegans Hypothetical
           protein R11A5.1b protein.
          Length = 896

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +1

Query: 244 EENVSEKVEERDSGTESDDEAD 309
           EEN SE+ EE D   ES++E+D
Sbjct: 602 EENESEEEEEDDEDEESEEESD 623


>Z83122-9|CAB05598.1|  906|Caenorhabditis elegans Hypothetical
           protein R11A5.1a protein.
          Length = 906

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +1

Query: 244 EENVSEKVEERDSGTESDDEAD 309
           EEN SE+ EE D   ES++E+D
Sbjct: 612 EENESEEEEEDDEDEESEEESD 633


>Z68300-2|CAA92616.2|  440|Caenorhabditis elegans Hypothetical
           protein T22B3.1 protein.
          Length = 440

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +1

Query: 316 HSGDFYTDVIMKWNDVTDISMGGEACACEPEPA 414
           H    Y DV +KW +  +I+  G  C   P PA
Sbjct: 391 HHSTEYNDVYLKWIEKRNITHPGIHCTSVPPPA 423


>Z81491-4|CAB04017.1|  252|Caenorhabditis elegans Hypothetical
           protein D1086.4 protein.
          Length = 252

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +1

Query: 256 SEKVEERDSGTESDDEADRVHSGD 327
           S K +ER+   +S+DEADR + G+
Sbjct: 103 SSKPKEREKSVDSNDEADRRNKGN 126


>AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical
           protein F39C12.1 protein.
          Length = 5105

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 15/30 (50%), Positives = 15/30 (50%)
 Frame = +1

Query: 421 LPDPEPDHLYDHHSSEEELEVINGVPSGAC 510
           LPDP PD L D   SE E E  N  P   C
Sbjct: 577 LPDPRPDLLSD---SESETEDHNAPPGNPC 603


>AL117202-20|CAB57898.4| 1205|Caenorhabditis elegans Hypothetical
           protein Y47D3A.26 protein.
          Length = 1205

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 16/62 (25%), Positives = 28/62 (45%)
 Frame = +1

Query: 160 ECRETRRPSGGSIMLKFLTQKLRTHSLNEENVSEKVEERDSGTESDDEADRVHSGDFYTD 339
           E +ET +     ++ + +T KL   SLNEEN  E+   +++        D +   +   D
Sbjct: 287 EDKETLQAEETKMVEEKMTLKLEIDSLNEENTRERQGRQNAEHSLQGVGDEIFKNEEELD 346

Query: 340 VI 345
            I
Sbjct: 347 TI 348


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,475,645
Number of Sequences: 27780
Number of extensions: 225052
Number of successful extensions: 1398
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1391
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)