Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_M12
         (640 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synth...   279   1e-77
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                25   0.62 
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    23   3.3  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   4.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   4.4  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    21   7.6  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   7.6  
AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein pro...    21   7.6  
AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding pr...    21   7.6  

>AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synthase
           16 kDa proteolipidsubunit protein.
          Length = 156

 Score =  279 bits (685), Expect = 1e-77
 Identities = 139/153 (90%), Positives = 147/153 (96%)
 Frame = +2

Query: 68  ENPIYGPFFGVMGAASAIIFSSLGAAYGTAKSGTGIAAMAVMRPEQIMKSIIPVVMAGII 247
           ++PIY PFFGVMGAASAIIFS+LGAAYGTAKSGTGIAAM+VMRPE IMKSIIPVVMAGII
Sbjct: 5   DHPIYAPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGII 64

Query: 248 AIYGLVVAVLIAGSLDQPSNNYTLYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTA 427
           AIYGLVVAVLIAG L++P   YTL+KGF+HLGAGLAVGFSGLAAGFAIGIVGDAGVRGTA
Sbjct: 65  AIYGLVVAVLIAGGLEEPKG-YTLFKGFVHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTA 123

Query: 428 QQPRLFVGMILILIFAEVLGLYGLIVAIYLYTK 526
           QQPRLFVGMILILIFAEVLGLYGLIVAIYLYTK
Sbjct: 124 QQPRLFVGMILILIFAEVLGLYGLIVAIYLYTK 156


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 25.0 bits (52), Expect = 0.62
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +1

Query: 478 GIGSIRAHRRHLPVHEAVNQPEHT 549
           G+G    + RHLP H  + +P +T
Sbjct: 203 GLGVQNGYGRHLPGHAQMGRPSYT 226



 Score = 21.8 bits (44), Expect = 5.8
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -1

Query: 196 PHHRHGGNT 170
           PHH+HG +T
Sbjct: 334 PHHQHGNHT 342


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +2

Query: 440 LFVGMI-LILIFAEVLGLYGLIVAIY 514
           L VG + LILIF  V G   + VAIY
Sbjct: 26  LLVGFLFLILIFLSVAGNILVCVAIY 51


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 13/50 (26%), Positives = 20/50 (40%)
 Frame = -2

Query: 495 PYRPNTSAKMRIRIIPTNNLGCWAVPRTPASPTMPMAKPAARPEKPTARP 346
           P   N+ A  RI I+P   + C  VP+   S  +   +      +P   P
Sbjct: 774 PQNTNSQAIPRIPILPMIPVYCVPVPQVNDSTILSPVREKLSSSQPMQPP 823


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -2

Query: 633 CPCARIVTERRLIR 592
           CP AR + ERR IR
Sbjct: 4   CPYARCIQERRHIR 17


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +2

Query: 230 VMAGIIAIYGLVVAVLIAGSLDQ 298
           +++G+I   GL++ VLI GS+ +
Sbjct: 413 IVSGLIT--GLIMRVLICGSISE 433


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -1

Query: 160 LGCAICSTKGAEDDGRRRPHNS 95
           L C + +T+GA+D   R P ++
Sbjct: 308 LHCNMENTEGADDASERNPRSA 329


>AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein
           protein.
          Length = 105

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 11/44 (25%), Positives = 17/44 (38%)
 Frame = +3

Query: 483 WVYTGSSSPFTCTRSSKPT*THSTPVAGAPDSYTTRILSISAQS 614
           W +T SS   T T++ K        +   PD     + SI   +
Sbjct: 46  WTFTSSSGDNTYTKTFKMNVPFEETLPSLPDRKFQTVTSIEGNT 89


>AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding
           protein protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 11/44 (25%), Positives = 17/44 (38%)
 Frame = +3

Query: 483 WVYTGSSSPFTCTRSSKPT*THSTPVAGAPDSYTTRILSISAQS 614
           W +T SS   T T++ K        +   PD     + SI   +
Sbjct: 48  WTFTSSSGDNTYTKTFKMNVPFEETLPSLPDRKFQTVTSIEGNT 91


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,832
Number of Sequences: 438
Number of extensions: 5209
Number of successful extensions: 16
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19193721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)