Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_M11
(490 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0050 + 21916020-21916489,21916906-21917380,21917472-21918278 31 0.50
01_01_1055 + 8342761-8342822,8343374-8343791,8343867-8344096,834... 31 0.50
02_01_0437 + 3171932-3172189,3174102-3174302,3174708-3174989 29 1.5
11_01_0126 + 1021224-1021256,1021717-1022486,1022582-1022667,102... 29 2.0
04_03_0926 - 20861383-20862198,20862359-20862430,20862938-208631... 28 3.5
03_05_0057 + 20350971-20351405 28 4.6
05_01_0178 - 1235546-1235756,1235869-1235945,1236194-1236347,123... 27 6.1
07_03_0570 - 19601264-19601779 27 8.1
02_01_0587 - 4341772-4342164 27 8.1
01_06_0295 + 28276505-28276576,28276682-28276888,28277492-282777... 27 8.1
>05_05_0050 + 21916020-21916489,21916906-21917380,21917472-21918278
Length = 583
Score = 31.1 bits (67), Expect = 0.50
Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Frame = -1
Query: 439 RAASHRTAP*QTDRKTNIDTLSITKCISHHCRGRRQRVVMRCGVAWRGAGWGRPLA-KSA 263
RA H + D+ + T ++ + ++ CR R + C +A G W LA +
Sbjct: 127 RARGHMLQELKLDKCSGFSTDAL-RLVARSCRSLRTLFLEECSIADNGTEWLHDLAVNNP 185
Query: 262 LIRALNLHLYTLHI 221
++ LN H+ L +
Sbjct: 186 VLETLNFHMTELTV 199
>01_01_1055 +
8342761-8342822,8343374-8343791,8343867-8344096,
8344136-8344324,8344458-8344555,8344588-8344742
Length = 383
Score = 31.1 bits (67), Expect = 0.50
Identities = 17/35 (48%), Positives = 20/35 (57%)
Frame = +3
Query: 243 RLSARMSADLASGRPQPAPRHATPHRITTRCLRPR 347
R++ M A LA P PAP P +T RCLRPR
Sbjct: 52 RITHPMRAKLAVPVPSPAPPR--PPSVTFRCLRPR 84
>02_01_0437 + 3171932-3172189,3174102-3174302,3174708-3174989
Length = 246
Score = 29.5 bits (63), Expect = 1.5
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -1
Query: 298 GAGWGRPLAKSALIRALNLHLYTLHITLCFFL 203
G GWGR +A S ++R ++ L C+F+
Sbjct: 76 GGGWGRVVALSPILRNRGFTVFKLFALSCYFI 107
>11_01_0126 +
1021224-1021256,1021717-1022486,1022582-1022667,
1024240-1024316,1025095-1025190,1025861-1026566,
1026732-1026775
Length = 603
Score = 29.1 bits (62), Expect = 2.0
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = -1
Query: 331 RVVMRCGVAWRGAGWGRPLAKSALIRALNLHLYTLHITLCFFLL 200
R++ R G AWRGA G + +I +++ ITL +F L
Sbjct: 332 RLICRHGTAWRGATKGHVRERDLMIGWVDIGKILSAITLLYFAL 375
>04_03_0926 -
20861383-20862198,20862359-20862430,20862938-20863123,
20863214-20863304,20863698-20863852,20864501-20864579,
20866797-20867263
Length = 621
Score = 28.3 bits (60), Expect = 3.5
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +2
Query: 254 ADERRLSERPSPACAAPRHTAP 319
AD+R + PSPA AAPR AP
Sbjct: 66 ADKRLRAVAPSPAAAAPRPPAP 87
>03_05_0057 + 20350971-20351405
Length = 144
Score = 27.9 bits (59), Expect = 4.6
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -2
Query: 459 SAAQYSAAPHHTAPRPNKPTA 397
+AA+ APHH P P++P+A
Sbjct: 33 AAARPDEAPHHRQPAPDRPSA 53
>05_01_0178 -
1235546-1235756,1235869-1235945,1236194-1236347,
1237067-1237216,1237363-1237484,1237806-1237910,
1237986-1238213
Length = 348
Score = 27.5 bits (58), Expect = 6.1
Identities = 19/40 (47%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = -2
Query: 489 AAARRRTRLVSAAQYSAAP-HHTAPRPNKPTAKRISTLYR 373
AAARR +L S A YSAA P PT +R S L R
Sbjct: 22 AAARRAVQLSSCAAYSAASGGDIEDSPPLPTPRRGSLLAR 61
>07_03_0570 - 19601264-19601779
Length = 171
Score = 27.1 bits (57), Expect = 8.1
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -2
Query: 441 AAPHHTAPRPNKPTAKRISTL 379
A PHH++PR ++P + R S L
Sbjct: 2 ALPHHSSPRSSRPISHRRSEL 22
>02_01_0587 - 4341772-4342164
Length = 130
Score = 27.1 bits (57), Expect = 8.1
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -1
Query: 364 CISHHCRGRRQRVVMRCGVAWRGAGWGRPLAKSA 263
C+ C G R R + CG A+ A R LA++A
Sbjct: 83 CLEAACAGERWRALPACGHAFHAACVDRWLARAA 116
>01_06_0295 +
28276505-28276576,28276682-28276888,28277492-28277740,
28277928-28278080,28278158-28278313,28278411-28278570,
28278664-28278815,28278906-28278993,28279111-28279223,
28279271-28279345,28279435-28279669,28279760-28280148
Length = 682
Score = 27.1 bits (57), Expect = 8.1
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +2
Query: 203 EKKAQRDM*CIEM*IKRADERRLSERPSPACAAPRHTAPHH 325
EKK QRD ++ +K E +PSP+ AP H
Sbjct: 470 EKKRQRDQKKLQDQLKAEQEALYGSKPSPSKPLSTKKAPRH 510
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,911,533
Number of Sequences: 37544
Number of extensions: 248129
Number of successful extensions: 1097
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1057
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1097
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -