Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_M11
         (490 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41016-3|AAM51497.1|  901|Caenorhabditis elegans Hypothetical pr...    29   1.8  
U41016-2|AAM51496.1|  899|Caenorhabditis elegans Hypothetical pr...    29   1.8  
Z50858-5|CAA90722.1|  534|Caenorhabditis elegans Hypothetical pr...    29   2.4  
U13074-1|AAA96982.1|  534|Caenorhabditis elegans steroid hormone...    29   2.4  
U13019-5|AAC24444.1|  994|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z71185-7|CAA94907.2|  520|Caenorhabditis elegans Hypothetical pr...    27   9.7  

>U41016-3|AAM51497.1|  901|Caenorhabditis elegans Hypothetical
           protein R11G1.6b protein.
          Length = 901

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -2

Query: 90  YHRLVLVQSAWLMNNFFFSIVNWGLIMILC 1
           Y+   L    WL     + I++WGL+ +LC
Sbjct: 76  YYTSFLQVLGWLFGEMLWVILSWGLVAVLC 105


>U41016-2|AAM51496.1|  899|Caenorhabditis elegans Hypothetical
           protein R11G1.6a protein.
          Length = 899

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -2

Query: 90  YHRLVLVQSAWLMNNFFFSIVNWGLIMILC 1
           Y+   L    WL     + I++WGL+ +LC
Sbjct: 76  YYTSFLQVLGWLFGEMLWVILSWGLVAVLC 105


>Z50858-5|CAA90722.1|  534|Caenorhabditis elegans Hypothetical
           protein F44A6.2 protein.
          Length = 534

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 450 QYSAAPHHTAPRPNKPTAKRIST 382
           QY+ AP H +P+P +PT  +  T
Sbjct: 508 QYTPAPEHQSPQPQQPTPNQQQT 530


>U13074-1|AAA96982.1|  534|Caenorhabditis elegans steroid hormone
           receptor familymember CNR14 protein.
          Length = 534

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 450 QYSAAPHHTAPRPNKPTAKRIST 382
           QY+ AP H +P+P +PT  +  T
Sbjct: 508 QYTPAPEHQSPQPQQPTPNQQQT 530


>U13019-5|AAC24444.1|  994|Caenorhabditis elegans Hypothetical
           protein T12A2.5 protein.
          Length = 994

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -3

Query: 413 LTNRPQNEYRHFIDNKVHFASLSR 342
           +T      YRHF+DN V F  LSR
Sbjct: 804 ITITETRNYRHFMDNLVEFTQLSR 827


>Z71185-7|CAA94907.2|  520|Caenorhabditis elegans Hypothetical
           protein C35A5.5 protein.
          Length = 520

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +2

Query: 8   IIISPQFTIEKKKLFMSHA 64
           I ISPQF  E+ +LF++HA
Sbjct: 183 ICISPQFVAEQWQLFVAHA 201


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,213,126
Number of Sequences: 27780
Number of extensions: 184578
Number of successful extensions: 622
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 914086948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)