Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_M10
         (554 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0362 + 7860088-7860197,7861606-7861636,7861738-7861801,786...    30   1.1  
09_06_0041 - 20440266-20441381                                         29   2.5  
09_06_0295 + 22099791-22100030,22100681-22100797,22100886-22102616     29   3.3  
03_05_1122 + 30546314-30549277,30549615-30549693,30549857-305499...    27   7.6  
03_05_0351 - 23382786-23382821,23383373-23383634,23384369-233856...    27   7.6  

>09_02_0362 +
           7860088-7860197,7861606-7861636,7861738-7861801,
           7861922-7862052,7863575-7863784,7863891-7863956,
           7864868-7865075,7866270-7866325,7866406-7867128,
           7868246-7868299,7868667-7868695,7869501-7869585,
           7870032-7870202,7870246-7870827
          Length = 839

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 22/63 (34%), Positives = 29/63 (46%)
 Frame = +1

Query: 133 VCVSVYILSVVAPLKTQKCCMPQD*SPLQPGLLSSATQLLCDHSQQCLHTHRLFQLHLLN 312
           +C++VY  S VA + TQ+  M Q     Q   L    QL   H  Q    ++L Q H L 
Sbjct: 634 ICLAVYHFSAVAEVPTQQPPMQQQQLQQQQNQLQQQNQLHQQHQLQ--PQNQLQQQHQLQ 691

Query: 313 YQL 321
            QL
Sbjct: 692 QQL 694


>09_06_0041 - 20440266-20441381
          Length = 371

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 13/22 (59%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = +1

Query: 463 PGTPPLNNSCSHMPS-WVTPCL 525
           PG PPLNNS    PS W+ P L
Sbjct: 349 PGAPPLNNSSLIRPSVWIFPSL 370


>09_06_0295 + 22099791-22100030,22100681-22100797,22100886-22102616
          Length = 695

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +2

Query: 221 QDCYLQQHSSCATTRSSAYTHTDXXXXXXXXXXXAHLPDHL 343
           ++C+ ++ S  A  + S + HTD           A++PDHL
Sbjct: 365 KECFTEEDSENARQKQS-FNHTDMVFSGLGNSNRAYMPDHL 404


>03_05_1122 + 30546314-30549277,30549615-30549693,30549857-30549945,
            30550422-30550538,30550873-30551111,30552279-30552365,
            30552732-30552831,30553319-30553532,30553617-30553777
          Length = 1349

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -1

Query: 293  NNLCVCRHCCEWSHKSCVAEDSSPGCRGDQSCGIQHFC 180
            ++LC C  C E  H  C  E ++      Q+C +  FC
Sbjct: 1003 SSLCTCSQCEEKYHPGCSPETTNTSNVSSQACDL--FC 1038


>03_05_0351 -
           23382786-23382821,23383373-23383634,23384369-23385675,
           23385776-23386290,23386379-23386741,23386916-23387284,
           23387365-23388057,23388152-23388238,23388354-23388612
          Length = 1296

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 9/35 (25%), Positives = 20/35 (57%)
 Frame = +2

Query: 158 QSSHPSKHKNAVCRKIDRPCSQDCYLQQHSSCATT 262
           +S+H ++H      + D+PC+Q   L+    C+++
Sbjct: 229 RSAHLARHNELYATRRDKPCAQSIALECPEDCSSS 263


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,731,642
Number of Sequences: 37544
Number of extensions: 264299
Number of successful extensions: 701
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 701
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)