Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_M08
(543 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0433 - 22891261-22891509,22892181-22892301,22892405-228924... 67 1e-11
04_04_0211 - 23636377-23636532,23636624-23636805,23637853-236379... 62 3e-10
03_05_0412 + 23993452-23994068,23996249-23996350,23996799-239969... 30 1.0
11_02_0082 - 8088169-8088284,8088613-8088697,8090344-8090442,809... 29 2.4
07_03_1327 + 25833927-25834391,25834943-25835340,25835395-25836331 29 2.4
01_04_0134 - 16481035-16481150,16481678-16481746,16482184-164825... 29 3.2
03_06_0094 + 31610866-31611288 28 4.2
03_05_1011 + 29658144-29658310,29659531-29659676,29660526-296606... 28 4.2
01_07_0229 + 42161770-42164562 28 4.2
04_04_1200 + 31690611-31690914,31690993-31691293,31691391-31696251 27 7.3
10_08_0974 + 21969713-21971914 27 9.7
08_01_0648 + 5602454-5602513,5602913-5603000,5603128-5604248,560... 27 9.7
07_01_1167 + 11030200-11031165,11031273-11031407,11031509-11031874 27 9.7
04_03_0604 - 17916482-17917659,17918121-17918291,17919015-17919966 27 9.7
01_06_0936 - 33174598-33174803,33174897-33174987 27 9.7
>02_04_0433 -
22891261-22891509,22892181-22892301,22892405-22892496,
22892692-22892755,22892855-22892920,22893102-22893193,
22893991-22894050,22894181-22894270,22894484-22894613,
22895066-22895157,22895299-22895373,22895663-22895754,
22896496-22896586,22897541-22897574,22897745-22897791,
22899110-22899209,22899300-22899436,22900837-22901015,
22901146-22901188,22901264-22901297,22901839-22901948,
22902043-22902224,22903062-22903168,22903266-22903480
Length = 833
Score = 66.9 bits (156), Expect = 1e-11
Identities = 44/102 (43%), Positives = 51/102 (50%), Gaps = 5/102 (4%)
Frame = +3
Query: 252 KNGGTRTVLLK----SRKSFYPTQD-KIRGRSHGKSFSKHVRRTRPNLTPGTVCILLAGR 416
KNGGT K + FYP D K R S K+ +R T +TPGTV ILLAGR
Sbjct: 31 KNGGTFPKAGKPAAAAEPKFYPADDVKPRAPSTRKANPTKLRST---ITPGTVLILLAGR 87
Query: 417 HAGKRXXXXXXXXXXXXXFTGPFAFNACPLRRIPQRYVIGTS 542
+ GKR TGPF N P+RR+ Q YVI TS
Sbjct: 88 YMGKRVVFLKQLKSGLLLITGPFKINGVPIRRVNQAYVIATS 129
>04_04_0211 -
23636377-23636532,23636624-23636805,23637853-23637959,
23637997-23638280
Length = 242
Score = 62.1 bits (144), Expect = 3e-10
Identities = 42/147 (28%), Positives = 59/147 (40%), Gaps = 4/147 (2%)
Frame = +3
Query: 114 LGNGVLRFSKSRMYHKKAIYKFVGXXXXXXXXXXXXTVVVKQIGGEKNGGTRTVLLKSRK 293
L G+ + S+S YH++ ++ + K V +
Sbjct: 7 LSQGIKKASRSHTYHRRGLWA-IKAKHGGAFPKAEKPAAAAAAAAPKFYPADDVKPRQPS 65
Query: 294 SFYPTQDKIRGRSHGK----SFSKHVRRTRPNLTPGTVCILLAGRHAGKRXXXXXXXXXX 461
+ P K+R S S + + R ++TPGTV ILLAGR GKR
Sbjct: 66 TRKPNPTKLRSPSSSNLPEFSLFRFILLMRSSITPGTVLILLAGRFMGKRVVFLKQLKSG 125
Query: 462 XXXFTGPFAFNACPLRRIPQRYVIGTS 542
TGPF N P+RR+ Q YVI TS
Sbjct: 126 LLLVTGPFKINGVPIRRVNQPYVIATS 152
>03_05_0412 +
23993452-23994068,23996249-23996350,23996799-23996994,
23997075-23997259,23997394-23997498,23997625-23997722,
23997832-23998067,23998314-23998382,23999768-23999833,
24000513-24000611,24000688-24000750
Length = 611
Score = 30.3 bits (65), Expect = 1.0
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -3
Query: 523 RCGIRRRGHALKAKGPVKSSRPLGNTPTSTT 431
RCG+ ++GH A GP + P ++ +TT
Sbjct: 23 RCGLPKKGHVCAAGGPAPTPSPSSSSGAATT 53
>11_02_0082 -
8088169-8088284,8088613-8088697,8090344-8090442,
8090537-8090609,8090694-8090804,8090901-8091074,
8091184-8091574,8091662-8092283,8092379-8093251,
8093294-8093800
Length = 1016
Score = 29.1 bits (62), Expect = 2.4
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Frame = +1
Query: 31 SPMWRRNPPQPQPAVSRSRKLANRGIMTSETVYSVSPKAGCTTRRL--YISLSVRRTRKL 204
+P R PP P PA +R+ K A + + P CT L Y++ V+R K
Sbjct: 595 APSKSRAPPTPPPAHTRATKKAK-----VDAAKNKDPGYDCTQEELDAYVASEVKRQFKP 649
Query: 205 KSPRNQ 222
+SP +
Sbjct: 650 RSPEKK 655
>07_03_1327 + 25833927-25834391,25834943-25835340,25835395-25836331
Length = 599
Score = 29.1 bits (62), Expect = 2.4
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = -3
Query: 478 PVKSSRPLGNTPTSTTRLPACLPANRMHTVPGVRLGLVLRTCLL 347
P ++ P+ +TP+ T + CLPA+R T R +LR L+
Sbjct: 258 PTWTTSPILSTPSHTWQRSLCLPASRSFTPRKSRRDQLLRLALV 301
>01_04_0134 -
16481035-16481150,16481678-16481746,16482184-16482503,
16482566-16482588
Length = 175
Score = 28.7 bits (61), Expect = 3.2
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +2
Query: 38 CGGETRRSRSRRCQEAESW 94
CGG RRSR RC A W
Sbjct: 60 CGGGARRSRGERCGMATPW 78
>03_06_0094 + 31610866-31611288
Length = 140
Score = 28.3 bits (60), Expect = 4.2
Identities = 10/20 (50%), Positives = 17/20 (85%)
Frame = +1
Query: 61 PQPAVSRSRKLANRGIMTSE 120
P+PAV+R R++A+RG+ S+
Sbjct: 109 PKPAVARKRRVASRGVRASK 128
>03_05_1011 +
29658144-29658310,29659531-29659676,29660526-29660602,
29660682-29660804,29661817-29661924,29661995-29662075,
29662157-29662309,29662469-29662540,29662745-29662863,
29662958-29663071,29663176-29663221,29664865-29664933,
29665662-29665808,29666410-29666706
Length = 572
Score = 28.3 bits (60), Expect = 4.2
Identities = 18/44 (40%), Positives = 22/44 (50%)
Frame = +1
Query: 46 RNPPQPQPAVSRSRKLANRGIMTSETVYSVSPKAGCTTRRLYIS 177
R P+P VSRSR L I SE +V P C + R Y+S
Sbjct: 251 RATPKPINEVSRSRSLQEDYIRLSEP--TVRPTINCFSYRYYLS 292
>01_07_0229 + 42161770-42164562
Length = 930
Score = 28.3 bits (60), Expect = 4.2
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +1
Query: 118 ETVYSVSPKAGCTTRRLYISLSVRRTRKLKS 210
+T + SPKA T R+ Y+S S+R T LKS
Sbjct: 890 DTSVASSPKAFFTKRQPYLSSSIRYTSFLKS 920
>04_04_1200 + 31690611-31690914,31690993-31691293,31691391-31696251
Length = 1821
Score = 27.5 bits (58), Expect = 7.3
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = -3
Query: 478 PVKSSRPLGNTPTSTTRLPACLPANRMHTVPGVRLG 371
P+KS+ P GN TTRL + A R+ TV + LG
Sbjct: 440 PLKSNHPKGNMILVTTRLLSL--AQRIGTVKPIELG 473
>10_08_0974 + 21969713-21971914
Length = 733
Score = 27.1 bits (57), Expect = 9.7
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +2
Query: 269 YSPAEKQEIILPHSGQDQGSFSWQEFQ*TCA*DET 373
Y P+ K +++ G +QG+ SW EF T D+T
Sbjct: 364 YRPS-KSDVVGGEDGVEQGNTSWPEFVPTSGPDKT 397
>08_01_0648 +
5602454-5602513,5602913-5603000,5603128-5604248,
5605146-5605217,5605218-5605373,5605458-5605748
Length = 595
Score = 27.1 bits (57), Expect = 9.7
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -1
Query: 528 HSAAESGAGDTR*KQKVQ*RVADHSATLQRARHA 427
H+ E G GD+ K+K Q VA + +RAR++
Sbjct: 558 HNGEEDGGGDSSAKRKAQGEVARLAVKQRRARNS 591
>07_01_1167 + 11030200-11031165,11031273-11031407,11031509-11031874
Length = 488
Score = 27.1 bits (57), Expect = 9.7
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Frame = -3
Query: 523 RCGIRRRGHALKAKGPVKSSRPLGNTPTSTTRLP--ACLPANRMHTV 389
RCG ++GH A PL +P ++ + LP + +HT+
Sbjct: 19 RCGFPKKGHVCAAAAAAPGDLPLLPSPEEEEKVDGISALPDDVVHTI 65
>04_03_0604 - 17916482-17917659,17918121-17918291,17919015-17919966
Length = 766
Score = 27.1 bits (57), Expect = 9.7
Identities = 16/55 (29%), Positives = 23/55 (41%)
Frame = +1
Query: 22 LHHSPMWRRNPPQPQPAVSRSRKLANRGIMTSETVYSVSPKAGCTTRRLYISLSV 186
LH + R PP P P + RK + I V++ S GC Y++ V
Sbjct: 25 LHAAVAGARAPPPPPPPGNCQRKCGDVDIPYPFGVWNGSESDGCAVPGFYLNCDV 79
>01_06_0936 - 33174598-33174803,33174897-33174987
Length = 98
Score = 27.1 bits (57), Expect = 9.7
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +1
Query: 16 LWLHHSPMWRRNPPQPQPAVSRSRKLANRGIMTSETVYSVSPKAGCT 156
L HH + + P PA++ ++ G+ SET +SVS AG T
Sbjct: 26 LTAHHGYVVVEDVKAPVPALTCNKV---HGVQASETCFSVSQSAGLT 69
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,943,039
Number of Sequences: 37544
Number of extensions: 366022
Number of successful extensions: 1203
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1201
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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