Samia BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_M07
         (616 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF387862-2|AAL56548.1|  942|Anopheles gambiae pol polyprotein pr...    26   1.1  
AF387858-1|AAL58708.1|  209|Anopheles gambiae integrase protein.       26   1.1  
AF387857-1|AAL58707.1|  215|Anopheles gambiae integrase protein.       26   1.1  
AF387850-1|AAL58705.1|  209|Anopheles gambiae integrase protein.       26   1.1  

>AF387862-2|AAL56548.1|  942|Anopheles gambiae pol polyprotein
           protein.
          Length = 942

 Score = 25.8 bits (54), Expect = 1.1
 Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
 Frame = +1

Query: 64  FDDAIAE-LDTLNEDSYKDSTLIMQLLRD-NLTLWTSDTQGDGDE 192
           FDD + + L++  EDS  D TLI + L D + ++  S  + DGD+
Sbjct: 334 FDDDVGDRLESEEEDS-TDETLIEEELTDTDSSMCDSTNEDDGDD 377


>AF387858-1|AAL58708.1|  209|Anopheles gambiae integrase protein.
          Length = 209

 Score = 25.8 bits (54), Expect = 1.1
 Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
 Frame = +1

Query: 64  FDDAIAE-LDTLNEDSYKDSTLIMQLLRD-NLTLWTSDTQGDGDE 192
           FDD + + L++  EDS  D TLI + L D + ++  S  + DGD+
Sbjct: 104 FDDDVGDRLESEEEDS-TDETLIEEELTDTDSSMCDSTNEDDGDD 147


>AF387857-1|AAL58707.1|  215|Anopheles gambiae integrase protein.
          Length = 215

 Score = 25.8 bits (54), Expect = 1.1
 Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
 Frame = +1

Query: 64  FDDAIAE-LDTLNEDSYKDSTLIMQLLRD-NLTLWTSDTQGDGDE 192
           FDD + + L++  EDS  D TLI + L D + ++  S  + DGD+
Sbjct: 110 FDDDVGDRLESEEEDS-TDETLIEEELTDTDSSMCDSTNEDDGDD 153


>AF387850-1|AAL58705.1|  209|Anopheles gambiae integrase protein.
          Length = 209

 Score = 25.8 bits (54), Expect = 1.1
 Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
 Frame = +1

Query: 64  FDDAIAE-LDTLNEDSYKDSTLIMQLLRD-NLTLWTSDTQGDGDE 192
           FDD + + L++  EDS  D TLI + L D + ++  S  + DGD+
Sbjct: 104 FDDDVGDRLESEEEDS-TDETLIEEELTDTDSSMCDSTNEDDGDD 147


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 454,836
Number of Sequences: 2352
Number of extensions: 7408
Number of successful extensions: 62
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 60132501
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)