Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_M03
         (608 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48334-1|CAA88308.1|  214|Caenorhabditis elegans Hypothetical pr...   310   5e-85
Z46791-1|CAA86761.1|  476|Caenorhabditis elegans Hypothetical pr...    31   0.85 
Z81055-1|CAB02889.1|  618|Caenorhabditis elegans Hypothetical pr...    28   4.5  
AL021474-2|CAA16309.3|  655|Caenorhabditis elegans Hypothetical ...    28   4.5  
AF099919-10|AAC68792.1|  205|Caenorhabditis elegans Max-like pro...    28   4.5  
Z66515-10|CAI70410.1|  510|Caenorhabditis elegans Hypothetical p...    28   6.0  
Z66515-9|CAA91346.1|  519|Caenorhabditis elegans Hypothetical pr...    28   6.0  
U10414-9|AAA19072.1|  712|Caenorhabditis elegans Hypothetical pr...    27   7.9  
L15313-8|AAA28196.1|  469|Caenorhabditis elegans Hypothetical pr...    27   7.9  
AF067214-6|AAC17005.2|  457|Caenorhabditis elegans Hypothetical ...    27   7.9  
AC024805-12|AAK39343.1|  557|Caenorhabditis elegans Hypothetical...    27   7.9  

>Z48334-1|CAA88308.1|  214|Caenorhabditis elegans Hypothetical
           protein F10B5.1 protein.
          Length = 214

 Score =  310 bits (761), Expect = 5e-85
 Identities = 141/194 (72%), Positives = 159/194 (81%)
 Frame = +3

Query: 27  MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 206
           MGRRPARCYRY KNKPYPKSRFCRGVPD KIRIFDLG KRA VD FP CVH++S+E E L
Sbjct: 1   MGRRPARCYRYIKNKPYPKSRFCRGVPDAKIRIFDLGNKRANVDTFPACVHMMSNEREHL 60

Query: 207 SSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFG 386
           SSEALEA RIC NKY+VKNCGKD FH+R+R HPFHV RINKMLSCAGADRLQTGMRGA+G
Sbjct: 61  SSEALEAARICANKYMVKNCGKDGFHLRVRKHPFHVTRINKMLSCAGADRLQTGMRGAYG 120

Query: 387 KPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYEREE 566
           KPQG VARV IG  + S+R  +      IEA RRAKFKFPGRQ I  S+KWGFTK++RE+
Sbjct: 121 KPQGLVARVDIGDILFSMRIKEGNVKHAIEAFRRAKFKFPGRQIIVSSRKWGFTKWDRED 180

Query: 567 FEKLRDAGTFANDG 608
           +E++R  G   +DG
Sbjct: 181 YERMRAEGRLRSDG 194


>Z46791-1|CAA86761.1|  476|Caenorhabditis elegans Hypothetical
           protein C09G5.2 protein.
          Length = 476

 Score = 30.7 bits (66), Expect = 0.85
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -2

Query: 391 GFPNAPRIPVWSLSAPA 341
           GFPN+P +P+W LS P+
Sbjct: 232 GFPNSPLLPIWLLSYPS 248


>Z81055-1|CAB02889.1|  618|Caenorhabditis elegans Hypothetical
           protein F01G10.1 protein.
          Length = 618

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
 Frame = +3

Query: 372 RGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIE--ALRRAKFKFPGRQK 518
           R   GKP   +A+   G+ I  + + D W  + +    +   K +F G QK
Sbjct: 228 RSTKGKPTAIIAKTLKGKGIEGIENEDNWHGKPVPEGTVNAIKARFHGSQK 278


>AL021474-2|CAA16309.3|  655|Caenorhabditis elegans Hypothetical
           protein Y32F6A.3 protein.
          Length = 655

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 5/37 (13%)
 Frame = +1

Query: 214 RRWKQAVSVATSTS-----*RTAVKISSTSG*DYTPS 309
           RRWK+ V +AT+TS      R+ V+ +STS    TP+
Sbjct: 504 RRWKKVVPIATNTSVSSSTPRSVVRTTSTSSVPTTPT 540


>AF099919-10|AAC68792.1|  205|Caenorhabditis elegans Max-like
           protein 2 protein.
          Length = 205

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = +3

Query: 87  RFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGR 233
           R C  +   K  I D  K+ A ++     + +++ EYEQ++S   +AG+
Sbjct: 93  RACDFMSQLKTDISDADKQLAQLNAQAAALEMIASEYEQMASSVPDAGQ 141


>Z66515-10|CAI70410.1|  510|Caenorhabditis elegans Hypothetical
           protein R53.1b protein.
          Length = 510

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -1

Query: 404 YCALGFPERTT-HPSLEPISSSARQHFIDA 318
           Y +LG  + T  HP+L  +SS  R+H++ A
Sbjct: 465 YTSLGGRDNTVKHPALRIVSSDGREHYLPA 494


>Z66515-9|CAA91346.1|  519|Caenorhabditis elegans Hypothetical
           protein R53.1a protein.
          Length = 519

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -1

Query: 404 YCALGFPERTT-HPSLEPISSSARQHFIDA 318
           Y +LG  + T  HP+L  +SS  R+H++ A
Sbjct: 474 YTSLGGRDNTVKHPALRIVSSDGREHYLPA 503


>U10414-9|AAA19072.1|  712|Caenorhabditis elegans Hypothetical
           protein F42A10.1 protein.
          Length = 712

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 14/56 (25%), Positives = 27/56 (48%)
 Frame = +1

Query: 421 DSPLCLYAQVTVGRHRSLRLCVVPSSSSLVARRSMYLRSGALPSTNVRNLRSYVML 588
           DSP  L+ ++ +G H + R+C+V  + +        L     PS  +RN+   + +
Sbjct: 508 DSPY-LFRKLNLGTHANSRICIVGENGAGKTTLLKLLLDDLQPSVGLRNVNRRIRI 562


>L15313-8|AAA28196.1|  469|Caenorhabditis elegans Hypothetical
           protein ZK353.8 protein.
          Length = 469

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = +3

Query: 426 PIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYEREEFEKLRDA 587
           PI S  +S     ++ E + RAK     +++    KK    K+ +EE  K R+A
Sbjct: 155 PIQSSSTSQEMTRELAEKVARAKALLEQKKQKDAEKKREADKHVKEEMTKAREA 208


>AF067214-6|AAC17005.2|  457|Caenorhabditis elegans Hypothetical
           protein F56C3.2 protein.
          Length = 457

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +3

Query: 477 ALRRAKFKFPGRQKIYVSKKWGFTKYEREEFE 572
           + + AKF+FP  +   +S+ +    Y++EEFE
Sbjct: 394 SFQEAKFQFPRIELHQISELFNLGTYQKEEFE 425


>AC024805-12|AAK39343.1|  557|Caenorhabditis elegans Hypothetical
          protein Y51H7C.12 protein.
          Length = 557

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 3  TRALWRTQMGRRPARCYRYCKN 68
          T  LWR  +GR   +C R CK+
Sbjct: 23 TEHLWRKYVGRNDLQCVRRCKS 44


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,178,864
Number of Sequences: 27780
Number of extensions: 343518
Number of successful extensions: 877
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 877
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)