Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_M01
         (555 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component Sec9|Sc...    26   3.2  
SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyc...    25   7.5  
SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom...    25   9.9  

>SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component
           Sec9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 419

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 20/68 (29%), Positives = 26/68 (38%), Gaps = 1/68 (1%)
 Frame = +2

Query: 41  TTFQFYSSGVYFDENCSSTELDHGVLVVGYGTDEEGGDYWLVKNSWGRSWGDLGYIKM-A 217
           TT   YSS  Y D N S++          YG+    G Y    N++G +     Y    A
Sbjct: 38  TTANSYSSNSYNDNNNSNSTYGSSNNYGNYGSSNNYGSYG-ASNTYGSNGSSNNYGNYGA 96

Query: 218 RNRNNHCG 241
            N N   G
Sbjct: 97  TNSNGDAG 104


>SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 13/51 (25%), Positives = 24/51 (47%)
 Frame = +2

Query: 29  DASQTTFQFYSSGVYFDENCSSTELDHGVLVVGYGTDEEGGDYWLVKNSWG 181
           DA+ T FQF S    +D    S   ++  L+  +  +    ++W+ + S G
Sbjct: 114 DANNTQFQFTSRKDLWDAPLYSPSYNNTNLLYNFSYNANPFEFWVTRKSDG 164


>SPCC63.03 |||DNAJ domain protein, DNAJC11
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 642

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +2

Query: 11  PLSVAIDASQTTFQFYSSGVYFDENCSSTELDHG 112
           P S + D  + +F  +SSG + DE  + ++ D G
Sbjct: 173 PTSFSNDLKKPSFNSFSSGSFDDEFSAPSDEDEG 206


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,340,137
Number of Sequences: 5004
Number of extensions: 19274
Number of successful extensions: 38
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)