Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_L23
         (564 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces po...    29   0.62 
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    28   0.82 
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   1.4  
SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyc...    27   1.4  
SPBC11C11.10 ||SPBC3B8.13c|pseudouridine synthase|Schizosaccharo...    27   2.5  
SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|...    27   2.5  
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|...    26   3.3  
SPAC1610.04 |mug99||meiotically upregulated gene Mug99|Schizosac...    26   3.3  
SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb...    26   4.4  
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac...    25   5.8  
SPCC4B3.02c |||Golgi transport protein Got1 |Schizosaccharomyces...    25   5.8  
SPCC1620.10 |cwf26||complexed with Cdc5 protein Cwf26 |Schizosac...    25   5.8  
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces...    25   7.7  
SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC su...    25   7.7  
SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|...    25   7.7  

>SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 284

 Score = 28.7 bits (61), Expect = 0.62
 Identities = 23/97 (23%), Positives = 46/97 (47%)
 Frame = +2

Query: 167 RINDDSCEVYGSVEERRSLISKKKKQACREERGLPGSGKKEGFQDCGRRSWKKKTIKSAE 346
           R+ +D+     +  E+R   S KKK   +   G     KK   +   ++  K+   K  E
Sbjct: 152 RVCEDASSSDEAKREKRKKHSSKKKSKKKTSTGSALDPKK--LEKITKKKKKEHKKKDKE 209

Query: 347 GAGRKKTNKLAEEGVGRKKTIKLAEEAGRKKTAIVEE 457
            + +K+ +  +++   +KK IKL ++   + T+ VE+
Sbjct: 210 SSSKKRKSGSSDKEEKKKKKIKLKDKP--ESTSSVEK 244


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 28.3 bits (60), Expect = 0.82
 Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 3/90 (3%)
 Frame = +2

Query: 251 REERGLPGSGKKEGFQDCGRRSWKKKTIKSA--EGAGRKKTNKLAEEGVGRKKTIKLAEE 424
           ++ER L    +KE  +D      KKK +K A  E   R++  +LAE+   +    K  EE
Sbjct: 583 KQERELKKIREKEKKRD------KKKQLKLAKEEERQRREAERLAEQAAQKALEAKRQEE 636

Query: 425 AGRKKTAIVEE*RI-LEPPKKED*XHRRKK 511
           A +K+    EE R+  E  KK+    R+K+
Sbjct: 637 ARKKR----EEQRLKREQEKKQQELERQKR 662



 Score = 25.4 bits (53), Expect = 5.8
 Identities = 31/128 (24%), Positives = 65/128 (50%), Gaps = 1/128 (0%)
 Frame = +2

Query: 137 KKEDCNRR*-KRINDDSCEVYGSVEERRSLISKKKKQACREERGLPGSGKKEGFQDCGRR 313
           K+E+  RR  +R+ + + +   ++E +R   ++KK++  R +R      KK+   +  +R
Sbjct: 608 KEEERQRREAERLAEQAAQK--ALEAKRQEEARKKREEQRLKRE---QEKKQQELERQKR 662

Query: 314 SWKKKTIKSAEGAGRKKTNKLAEEGVGRKKTIKLAEEAGRKKTAIVEE*RILEPPKKED* 493
             K+K  K  E   +K+  +   E + R++ ++  EE       I+EE +  E   KE+ 
Sbjct: 663 EEKQKQ-KEREKKLKKQQQEADREKMAREQRLREEEEK-----RILEERKRREKLDKEEE 716

Query: 494 XHRRKKII 517
             RR++++
Sbjct: 717 ERRRRELL 724


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 17/71 (23%), Positives = 31/71 (43%)
 Frame = +3

Query: 3   TRKKTATAEERRPQPPKKEDCNRRRKKTATIEERRSWKREDCNRRRRKTATADERGLMMI 182
           ++ K  +  E RP+   K + +R  K     ++ +  K+ED  R R  + +  +   +  
Sbjct: 595 SKHKRDSKHEARPE--SKHESHRESKSAEKDKKDKKDKKEDSKRSRSHSVSKPDSSKLRT 652

Query: 183 LVKSTGASKKE 215
               TGA K E
Sbjct: 653 WTDRTGAFKVE 663


>SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +2

Query: 314 SWKKKTIKSAEGAGRKKTNKLAEEGVGRKKTIKLA 418
           +WK   I  A  A R+   K  +EG+ R +TI LA
Sbjct: 157 AWKATAIGRASKAAREYLEKNWKEGLSRDETIHLA 191


>SPBC11C11.10 ||SPBC3B8.13c|pseudouridine
           synthase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 407

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 24  AEERRPQPPKKEDCNRRRKKT 86
           A+  RP PP   D NRRR+K+
Sbjct: 80  AQYFRPAPPHPNDRNRRRRKS 100



 Score = 25.4 bits (53), Expect = 5.8
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +1

Query: 13  RLQPPKKEDRNRRRKKT 63
           R  PP   DRNRRR+K+
Sbjct: 84  RPAPPHPNDRNRRRRKS 100


>SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 542

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +3

Query: 69  RRRKKTATIEERRSWKREDCNRRR 140
           RRR++T  IE R+  + E+ N+RR
Sbjct: 28  RRRRETQQIEIRKQKREENLNKRR 51


>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
            Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1328

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 17/58 (29%), Positives = 28/58 (48%)
 Frame = +2

Query: 170  INDDSCEVYGSVEERRSLISKKKKQACREERGLPGSGKKEGFQDCGRRSWKKKTIKSA 343
            +N  S    GSV +R+S    +  ++ R +RG     +K  +    + S  +KT KSA
Sbjct: 1259 MNSQSLTQTGSVPKRKSTSYTRPSKSYRHKRGSTSYSRKRKYSTSQKDS--RKTSKSA 1314


>SPAC1610.04 |mug99||meiotically upregulated gene
           Mug99|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 16/46 (34%), Positives = 19/46 (41%)
 Frame = +2

Query: 311 RSWKKKTIKSAEGAGRKKTNKLAEEGVGRKKTIKLAEEAGRKKTAI 448
           RSWKK+  K     GRK   +L     GR       + A  KK  I
Sbjct: 446 RSWKKEYWKELLEEGRKFERQLCRNVFGRSSFYVQQKTAAEKKEHI 491


>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 508

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = +2

Query: 221 LISKKKKQACREERGLPGSGKKEGFQ--DCGRRSWKKKTIKSAEGAGRKKTNK 373
           +I KKKK++ + +     S KKE  +  D   +  K+K+ +S +G   KK  K
Sbjct: 450 VIEKKKKKSSKLKEADGESSKKEKKEKKDKKHKKSKRKSEESEDGESPKKKKK 502


>SPAC23C4.02 |crn1||actin binding protein, coronin
           Crn1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +3

Query: 27  EERRPQPPKKEDCNRRRKKTATIEERRSWKREDCNRRRRKTATADER 167
           E    Q P KE   +    +A+  E  S KR++ N ++ +T T  +R
Sbjct: 440 ESAEEQKPSKEPEVKPTTPSASKVEEPSKKRDEDNHQKEETVTQPKR 486


>SPCC4B3.02c |||Golgi transport protein Got1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 129

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 22/70 (31%), Positives = 30/70 (42%)
 Frame = -2

Query: 296 ENPLFSRSLVVLFLRGTLVFFFSR*VIFFLRRSRRLHKNHH*SSFIGGCSLPSSAVAVFS 117
           + PL S   ++L     ++  FS+ V FFLR+ R L       SF  G  L      +F 
Sbjct: 30  DGPLLSLGNLLLVFGFFMIAGFSKSVSFFLRKDRMLGS----ISFFSGLLL-----TLFH 80

Query: 116 LPAPSFFDGC 87
            P   FF  C
Sbjct: 81  FPIIGFFVEC 90


>SPCC1620.10 |cwf26||complexed with Cdc5 protein Cwf26
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 305

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 16/61 (26%), Positives = 29/61 (47%)
 Frame = +2

Query: 275 SGKKEGFQDCGRRSWKKKTIKSAEGAGRKKTNKLAEEGVGRKKTIKLAEEAGRKKTAIVE 454
           +GK+  F+   RR  ++K+    E   RK    +  +  GR+  + LA +  ++K    E
Sbjct: 123 TGKQVTFKAEERRKREEKSSNLDEEELRKSRETVYRDATGRRIDLVLARKEAKRKLKEKE 182

Query: 455 E 457
           E
Sbjct: 183 E 183


>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1485

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 27/82 (32%), Positives = 35/82 (42%)
 Frame = +2

Query: 128  QPPKKEDCNRR*KRINDDSCEVYGSVEERRSLISKKKKQACREERGLPGSGKKEGFQDCG 307
            +P K  D N    +  D+S  +  SVEE R  ISK       +        +    +D G
Sbjct: 1281 EPEKSSDINI--VKTEDNSHGL--SVEENR--ISKSPGLDSSDSGKSRKRSQSVDSEDAG 1334

Query: 308  RRSWKKKTIKSAEGAGRKKTNK 373
             +   KK   SA G GR KTNK
Sbjct: 1335 SKKPVKKIAASASGRGR-KTNK 1355


>SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC
           subunit Psc3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 962

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = +3

Query: 9   KKTATAEERRPQPPKKEDCNRRRKKTATIEE 101
           +KT ++++R P+P  K    +R ++ A +EE
Sbjct: 47  EKTISSKKRHPRPNSKGVNVKRSRRNAIVEE 77


>SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 182

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 173 NDDSCEVYGSVEERRSLISKKKKQACREERGLPGSGKK 286
           +DDS +   S E+++    +KKK  C E     G G++
Sbjct: 70  DDDSSDDEESCEKKKPKCCEKKKPKCCESEQNNGCGRR 107


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,926,281
Number of Sequences: 5004
Number of extensions: 34170
Number of successful extensions: 168
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)