Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_L22
         (536 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    40   3e-04
SPCC16C4.17 |mug123||meiotically upregulated gene Mug123|Schizos...    31   0.14 
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    28   1.0  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   2.3  
SPAC22A12.14c |||BSD domain protein, unknown biological role|Sch...    27   2.3  
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom...    27   2.3  
SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|c...    26   3.1  
SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase Ubp16|Schizo...    25   7.2  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    25   7.2  
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb...    25   9.5  
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo...    25   9.5  
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po...    25   9.5  

>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 39.5 bits (88), Expect = 3e-04
 Identities = 20/70 (28%), Positives = 39/70 (55%)
 Frame = +1

Query: 22   GLYIFARANLFRNCFELQPTFNQLIERPLQLELVPGERYPAQRRNDAAVPEALILSITDM 201
            GLY+    +LFR+   L+  +N++ + P +L L  GE YP+  +  ++V       I ++
Sbjct: 1210 GLYVLCNRDLFRSTRGLEKLWNEIEKTPDKLLLTTGEIYPSSHKIGSSVE---TFEIENL 1266

Query: 202  PHMARYVYDL 231
             H++ YV ++
Sbjct: 1267 LHLSNYVVEM 1276


>SPCC16C4.17 |mug123||meiotically upregulated gene
           Mug123|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 235

 Score = 30.7 bits (66), Expect = 0.14
 Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = +1

Query: 313 SRSQQPDRLVPT-HPGATDGQDSDDEESAIPSTSSFQPTHI 432
           SR+  P   + T    AT+G+D DDE+  + STS+  PT+I
Sbjct: 104 SRTMAPQHTILTPRLSATEGKD-DDEDELVISTSNTAPTYI 143


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 14/48 (29%), Positives = 27/48 (56%)
 Frame = +1

Query: 67  ELQPTFNQLIERPLQLELVPGERYPAQRRNDAAVPEALILSITDMPHM 210
           +L+   +++IER +++  VPG R P+  R  A   E + + + D P +
Sbjct: 155 KLEDERHRIIERAMKM--VPGFRAPSDYRRPAKTQEKVYVPVKDYPEI 200


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 16/57 (28%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
 Frame = +3

Query: 174  GIDIEYNRYAAYG--ALRLRPLLGKGSGLHQTVRKFPE-FVVRPRVCESITFAAARP 335
            GID+ YN ++AYG     ++PL+ +   +++ ++  P  +V+R R+ + +   A+ P
Sbjct: 1728 GIDLCYNMHSAYGNWIPGMKPLIQQ--SMNKIMKANPALYVLRERIRKGLQLYASEP 1782


>SPAC22A12.14c |||BSD domain protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 347

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 11/46 (23%), Positives = 25/46 (54%)
 Frame = +1

Query: 313 SRSQQPDRLVPTHPGATDGQDSDDEESAIPSTSSFQPTHIVNEIDE 450
           S+  Q +    +H G  DG+  ++EE+ + S+S+ + +    E+ +
Sbjct: 285 SKGLQIETQPASHDGEVDGEVKEEEENKVSSSSNIEASQSSLEVKD 330


>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 534

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +1

Query: 385 EESAIPSTSSFQPTHIVNEIDEPP 456
           E+   P TS  QPTH +NE    P
Sbjct: 214 EDECHPPTSDMQPTHELNESPSTP 237


>SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 778

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = +1

Query: 412 SFQPTHIVNEIDEPPEL 462
           S +PTH++N+ID+  E+
Sbjct: 68  SLEPTHLINDIDDDNEI 84


>SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase
           Ubp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 457

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 377 LTMKSPPYHQHLPSNQHTLSTR 442
           L  ++PP  Q+L S QH+LS R
Sbjct: 142 LMTQTPPLVQYLLSGQHSLSCR 163


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +2

Query: 29   ISSRGQISSGIALNSNPPLTS 91
            ++S   I+S  ALN++PP+TS
Sbjct: 1638 LNSSTPITSSTALNTSPPITS 1658


>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1254

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +1

Query: 319 SQQPDRLVPTHPGATDGQDSDDEESAIPSTSS 414
           S  P+R +PT P      + D   S +P  SS
Sbjct: 70  SSSPERELPTSPSHHANTEIDSSSSMLPPPSS 101


>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -2

Query: 244 PFPSRGRRRSAPYAAYRLYSISMPQALRRRFAFAPGTVPRAL 119
           PF S   R    + + R  SIS+P  L+  F+ +P  + R L
Sbjct: 696 PFSSSSSRGGLSHISSRNVSISVPTVLQDVFSDSPLVLSRKL 737


>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 949

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 55  RNCFELQPTFNQLIERPLQLELVPGERYPAQ 147
           R+C E+ P   ++ E  LQLEL    R P++
Sbjct: 878 RDCVEVIPDVIRMFEDRLQLELTDIARNPSK 908


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,034,973
Number of Sequences: 5004
Number of extensions: 39951
Number of successful extensions: 226
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 225
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)