Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_L22
(536 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_03_0186 + 15243150-15243563,15243685-15243777,15244604-152446... 56 1e-08
06_03_0850 - 25354002-25354391,25354480-25354575,25355352-253556... 31 0.44
04_04_1249 - 32067644-32067787,32068245-32068346,32068415-320684... 29 2.3
12_02_0326 + 17555731-17556387 28 4.1
09_06_0147 + 21195222-21195377,21195471-21195522,21196842-212043... 28 4.1
04_03_0862 + 20389903-20390247,20392408-20392483,20392924-20392979 28 4.1
04_01_0545 + 7046861-7047955,7048822-7049436,7052887-7054692 27 7.2
02_01_0102 - 749122-749799,750123-750371,750753-750851,751380-75... 27 7.2
01_06_1357 + 36632992-36633621,36634003-36635136,36635525-366361... 27 7.2
03_06_0321 + 33112793-33113026,33113166-33113546 27 9.5
03_04_0100 - 17279903-17280107,17280131-17280678 27 9.5
01_05_0594 - 23506423-23506767,23507004-23507153,23507264-23508325 27 9.5
>03_03_0186 + 15243150-15243563,15243685-15243777,15244604-15244666,
15245028-15245114,15245197-15245349,15245422-15245579,
15246458-15246692,15246782-15246892,15246942-15246968,
15247269-15248327,15248432-15248692,15249011-15249196,
15249642-15250793,15250886-15251236,15251343-15251738
Length = 1581
Score = 56.4 bits (130), Expect = 1e-08
Identities = 30/74 (40%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Frame = +1
Query: 1 ARGRARLGLYIFARANLFRNCFELQPTFNQLIERPLQLELVPGERYP-AQRRNDAAVPEA 177
A RARLGLY+F R +LF C+ELQPTF L++RP +L L E P +R +
Sbjct: 1370 AMSRARLGLYVFCRRSLFEQCYELQPTFQLLLQRPDKLGLNLEECTPFTERPLEETGNIH 1429
Query: 178 LILSITDMPHMARY 219
+ I D+ H+ +
Sbjct: 1430 YVAGIEDIGHLVNF 1443
>06_03_0850 -
25354002-25354391,25354480-25354575,25355352-25355634,
25357213-25357799
Length = 451
Score = 31.5 bits (68), Expect = 0.44
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +1
Query: 304 AKASRSQQPDRLVPTHPGATDGQDSDDEESAI 399
A A + P R P P A+DG DSDDE+ +
Sbjct: 62 AAADAADPPPRQPPPPPPASDGADSDDEDYVV 93
>04_04_1249 -
32067644-32067787,32068245-32068346,32068415-32068438,
32068439-32068543,32068625-32068729,32068885-32068966,
32069254-32069456,32069534-32069692,32070045-32070154,
32070264-32070405,32070544-32070690,32070773-32070847,
32070923-32071132,32071223-32071426,32071514-32071633,
32071743-32071852,32072033-32072177,32072266-32072499,
32072611-32072646
Length = 818
Score = 29.1 bits (62), Expect = 2.3
Identities = 28/99 (28%), Positives = 44/99 (44%), Gaps = 4/99 (4%)
Frame = +1
Query: 37 ARANLFRNCFELQPTFN-QLIERPLQLELVPGERYPAQRRNDAAVPEALILSITDMPHMA 213
A NL R C L+ +FN + +R L +E ER QR + A + L + + + H A
Sbjct: 152 AHLNLTRQCDSLEESFNKEKADRMLAVESYEKER--QQRESAEASLDLLSVDLERVSHEA 209
Query: 214 RYVYDLYLEKVRDCTK---QYEXXXXXXXXXXXAKASRS 321
+ + L+ V+D K +Y A AS+S
Sbjct: 210 KR-FSEQLKMVQDTNKRLQEYNTSLQQYNSNLQADASKS 247
>12_02_0326 + 17555731-17556387
Length = 218
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +1
Query: 310 ASRSQQPDRLVPTHPGATDGQDSDDEESAIPSTSSFQPTHIV 435
ASRS++P L P HP +D +D + P+++ +V
Sbjct: 65 ASRSRKPLHLQPHHPKPEHEEDDNDHNPSNPASADADADDLV 106
>09_06_0147 + 21195222-21195377,21195471-21195522,21196842-21204362,
21204453-21205031,21205176-21205484,21205638-21205718,
21205971-21206279,21207430-21207816,21207964-21208767,
21208856-21209218,21209437-21209667,21209934-21210278,
21210494-21210712,21210759-21210815,21210978-21211322,
21211538-21211756,21211803-21211859,21212022-21212366,
21212584-21212814,21213100-21213458
Length = 4322
Score = 28.3 bits (60), Expect = 4.1
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = +1
Query: 319 SQQPDRL--VPTHPGATDGQDSDDEESAIPSTSSFQ 420
S+QP R PT DG+D+ E ++ STSS Q
Sbjct: 1207 SRQPKRTGSTPTEKAVQDGRDAFRESKSVDSTSSTQ 1242
>04_03_0862 + 20389903-20390247,20392408-20392483,20392924-20392979
Length = 158
Score = 28.3 bits (60), Expect = 4.1
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +1
Query: 121 VPGERYPAQRRNDAAVPE-ALILSITDMPHMARYVYDL 231
VP E A RRN VPE A+ L + +P M R +Y +
Sbjct: 101 VPREEPAATRRNRRPVPESAMGLILLHLPIMGRLIYQV 138
>04_01_0545 + 7046861-7047955,7048822-7049436,7052887-7054692
Length = 1171
Score = 27.5 bits (58), Expect = 7.2
Identities = 18/68 (26%), Positives = 29/68 (42%)
Frame = +3
Query: 105 AAIRTSARGTVPGAKAKRRRSA*GIDIEYNRYAAYGALRLRPLLGKGSGLHQTVRKFPEF 284
+A+ TSA G + A ++ +D+ ALR+ L G G GL E
Sbjct: 162 SAVGTSAVGVLTEAWCNAKKQPGFVDLTMLVTENSDALRVISLWGTGGGLGGMTSVIKEA 221
Query: 285 VVRPRVCE 308
+P +C+
Sbjct: 222 YEKPEICQ 229
>02_01_0102 - 749122-749799,750123-750371,750753-750851,751380-751889,
752025-753905,754093-754296,754807-754899,755036-755122,
755241-755328,755533-755645,755943-757259,757398-758672,
759166-759273
Length = 2233
Score = 27.5 bits (58), Expect = 7.2
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -2
Query: 199 YRLYSISMPQALRRRFAFAPGTVPRALVLIAAVVLS 92
+RL+ I P LRRR G++PR + A V LS
Sbjct: 1152 HRLHQILEPFMLRRRVEDVEGSLPRKVDCSALVTLS 1187
>01_06_1357 +
36632992-36633621,36634003-36635136,36635525-36636193,
36636250-36636343,36636378-36636490
Length = 879
Score = 27.5 bits (58), Expect = 7.2
Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -2
Query: 325 AANVMLSQTRGRTTN-SGNFRTVWCNPEPFPSRGRRRS 215
AA + S RGR S N V +PEP P RGRR+S
Sbjct: 309 AARIHPSIFRGRHIRCSPNGAAVPESPEPAPRRGRRKS 346
>03_06_0321 + 33112793-33113026,33113166-33113546
Length = 204
Score = 27.1 bits (57), Expect = 9.5
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -3
Query: 213 RHMRHIGYTQYQCLRHCGVVSPLRRVPFPGH 121
+ +H GY+ + C H VV+ L R+ + GH
Sbjct: 100 QEFQHRGYSLFTCNCHSFVVNNLNRLFYSGH 130
>03_04_0100 - 17279903-17280107,17280131-17280678
Length = 250
Score = 27.1 bits (57), Expect = 9.5
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = -2
Query: 295 GRTTNSGNFRTVWCNPEPFPSRGRRRSAPYAAYRLYSISMPQALRRRFAF 146
G T + +R +P P R RRR A +A R++ + Q+ RR A+
Sbjct: 158 GDETWAPGWRGAPATKKPLPRRRRRREAKHAV-RVHRVYQAQSRRREVAW 206
>01_05_0594 - 23506423-23506767,23507004-23507153,23507264-23508325
Length = 518
Score = 27.1 bits (57), Expect = 9.5
Identities = 11/43 (25%), Positives = 16/43 (37%)
Frame = +1
Query: 328 PDRLVPTHPGATDGQDSDDEESAIPSTSSFQPTHIVNEIDEPP 456
P VP P A DS+D+ + S+ + PP
Sbjct: 43 PAPFVPAPPDAASADDSEDDHFSFTSSDDYSAAEDARSFPSPP 85
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,664,559
Number of Sequences: 37544
Number of extensions: 317424
Number of successful extensions: 1118
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1085
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1115
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -