Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_L21
         (661 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ...    27   3.2  
SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces p...    25   9.7  

>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1213

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -2

Query: 252 DSFYINIENVHYVTYLLHYVIIKIIEYLSNVMFC 151
           D FY+NI+N+  V + L+    K +    NV+ C
Sbjct: 646 DYFYMNIQNIGTVRFRLYLDSSKALTDRLNVLLC 679


>SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 467

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -2

Query: 255 IDSFYINIENVHYVTYLLHYVIIKIIEYLSNV 160
           + SF   IEN+ +   LLH  +++I   + N+
Sbjct: 256 VGSFPDRIENIFFNYALLHQALVQIATQMKNI 287


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,669,219
Number of Sequences: 5004
Number of extensions: 54994
Number of successful extensions: 98
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)