Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_L21
         (661 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X63692-1|CAA45219.1| 1616|Homo sapiens DNA (cytosine-5-)-methylt...    30   6.4  
BC126227-1|AAI26228.1| 1632|Homo sapiens DNMT1 protein protein.        30   6.4  
BC092517-1|AAH92517.1| 1511|Homo sapiens DNMT1 protein protein.        30   6.4  
AF180682-1|AAF23609.1| 1280|Homo sapiens DNA (cytosine-5)-methyl...    30   6.4  
AB209413-1|BAD92650.1| 1606|Homo sapiens DNA (cytosine-5-)-methy...    30   6.4  

>X63692-1|CAA45219.1| 1616|Homo sapiens DNA
            (cytosine-5-)-methyltransferase protein.
          Length = 1616

 Score = 30.3 bits (65), Expect = 6.4
 Identities = 17/35 (48%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
 Frame = +3

Query: 297  PSF*VVVNVCN-ISFKSSQIV-LTLICIVRNSIQC 395
            P F ++ NV N +SFK S ++ LTL C+VR   QC
Sbjct: 1260 PRFFLLENVRNFVSFKRSMVLKLTLRCLVRMGYQC 1294


>BC126227-1|AAI26228.1| 1632|Homo sapiens DNMT1 protein protein.
          Length = 1632

 Score = 30.3 bits (65), Expect = 6.4
 Identities = 17/35 (48%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
 Frame = +3

Query: 297  PSF*VVVNVCN-ISFKSSQIV-LTLICIVRNSIQC 395
            P F ++ NV N +SFK S ++ LTL C+VR   QC
Sbjct: 1276 PRFFLLENVRNFVSFKRSMVLKLTLRCLVRMGYQC 1310


>BC092517-1|AAH92517.1| 1511|Homo sapiens DNMT1 protein protein.
          Length = 1511

 Score = 30.3 bits (65), Expect = 6.4
 Identities = 17/35 (48%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
 Frame = +3

Query: 297  PSF*VVVNVCN-ISFKSSQIV-LTLICIVRNSIQC 395
            P F ++ NV N +SFK S ++ LTL C+VR   QC
Sbjct: 1155 PRFFLLENVRNFVSFKRSMVLKLTLRCLVRMGYQC 1189


>AF180682-1|AAF23609.1| 1280|Homo sapiens DNA
            (cytosine-5)-methyltransferase protein.
          Length = 1280

 Score = 30.3 bits (65), Expect = 6.4
 Identities = 17/35 (48%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
 Frame = +3

Query: 297  PSF*VVVNVCN-ISFKSSQIV-LTLICIVRNSIQC 395
            P F ++ NV N +SFK S ++ LTL C+VR   QC
Sbjct: 924  PRFFLLENVRNFVSFKRSMVLKLTLRCLVRMGYQC 958


>AB209413-1|BAD92650.1| 1606|Homo sapiens DNA
            (cytosine-5-)-methyltransferase 1 variant protein.
          Length = 1606

 Score = 30.3 bits (65), Expect = 6.4
 Identities = 17/35 (48%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
 Frame = +3

Query: 297  PSF*VVVNVCN-ISFKSSQIV-LTLICIVRNSIQC 395
            P F ++ NV N +SFK S ++ LTL C+VR   QC
Sbjct: 1247 PRFFLLENVRNFVSFKRSMVLKLTLRCLVRMGYQC 1281


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,825,952
Number of Sequences: 237096
Number of extensions: 1480212
Number of successful extensions: 1946
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1915
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1946
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7422585720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)