Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_L21
         (661 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75554-2|CAA99954.1|  526|Caenorhabditis elegans Hypothetical pr...    29   2.9  
AF016448-17|AAB65962.1|  656|Caenorhabditis elegans Hypothetical...    29   2.9  
Z83229-1|CAB05738.1|  281|Caenorhabditis elegans Hypothetical pr...    29   3.9  
U80931-1|AAB37998.2|  343|Caenorhabditis elegans Hypothetical pr...    29   3.9  
U80838-7|AAC71112.3|  581|Caenorhabditis elegans Hypothetical pr...    29   3.9  
U41026-3|AAL02447.3|  817|Caenorhabditis elegans Hypothetical pr...    29   3.9  
AC006780-5|AAF60646.1|  287|Caenorhabditis elegans Hypothetical ...    28   5.1  
AC006780-4|AAO21411.1|  312|Caenorhabditis elegans Hypothetical ...    28   5.1  
AL117206-1|CAB60446.1|  644|Caenorhabditis elegans Hypothetical ...    28   6.8  

>Z75554-2|CAA99954.1|  526|Caenorhabditis elegans Hypothetical
           protein ZC455.3 protein.
          Length = 526

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +1

Query: 547 IFKYQNYAYL*RKKIIIPEAEHILTIFFNIIIDYY 651
           +F Y +  ++ R   I+ +A H +T+F  II DYY
Sbjct: 24  VFGYSHMKFMGRIADILADAGHNVTLFQPIIYDYY 58


>AF016448-17|AAB65962.1|  656|Caenorhabditis elegans Hypothetical
           protein F41E6.14 protein.
          Length = 656

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = -2

Query: 234 IENVHYVTYLLHYVIIKIIEYL 169
           I ++ YVTYL+H+ +I  ++Y+
Sbjct: 287 IGDISYVTYLIHWPVINFVKYI 308


>Z83229-1|CAB05738.1|  281|Caenorhabditis elegans Hypothetical
           protein F54F11.1 protein.
          Length = 281

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 10/29 (34%), Positives = 22/29 (75%)
 Frame = -1

Query: 352 ICDDLKEILQTFTTTQNEGTILILSVLNV 266
           + +++++ +Q  T T + GT++ILS+L+V
Sbjct: 139 VVENIQQTIQNITQTMSTGTLVILSLLDV 167


>U80931-1|AAB37998.2|  343|Caenorhabditis elegans Hypothetical
           protein T01B11.1 protein.
          Length = 343

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +3

Query: 309 VVVNVCNISFKSSQIVLTLICIVRNSIQCFLITILLCFLKEIF 437
           ++ ++ N SFK + +V  L   + NS  CF+  I LC   + F
Sbjct: 65  ILFDIFNFSFKGT-LVCKLELFISNSAACFINWIWLCLFTQRF 106


>U80838-7|AAC71112.3|  581|Caenorhabditis elegans Hypothetical
           protein F47F6.3 protein.
          Length = 581

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
 Frame = -2

Query: 234 IENVHYVTYLLHYVIIKII--EYLSNVMFCIKIT 139
           I ++ YVTYL+H+ +I I     +++ +FCI  T
Sbjct: 223 IGDISYVTYLVHWPVISIFLTSSVNSYVFCIVTT 256


>U41026-3|AAL02447.3|  817|Caenorhabditis elegans Hypothetical
           protein C28G1.3 protein.
          Length = 817

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -1

Query: 214 YIPITLRDNKDYRIFVKCYVLYKNYMKQNHF 122
           Y PIT+   +++R  ++ +  YK  M+Q  F
Sbjct: 466 YTPITVNSEEEFRTIIRKFPFYKRSMEQEPF 496


>AC006780-5|AAF60646.1|  287|Caenorhabditis elegans Hypothetical
           protein Y47D9A.2a protein.
          Length = 287

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = +2

Query: 89  LLYCFIFPLSSKMVLFHVIFIQNITFDKY 175
           L++C + PL +  ++F V+F QNIT+  Y
Sbjct: 75  LVHCSLTPLDNATMVFPVVF-QNITYQVY 102


>AC006780-4|AAO21411.1|  312|Caenorhabditis elegans Hypothetical
           protein Y47D9A.2b protein.
          Length = 312

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = +2

Query: 89  LLYCFIFPLSSKMVLFHVIFIQNITFDKY 175
           L++C + PL +  ++F V+F QNIT+  Y
Sbjct: 75  LVHCSLTPLDNATMVFPVVF-QNITYQVY 102


>AL117206-1|CAB60446.1|  644|Caenorhabditis elegans Hypothetical
           protein Y67A10A.1 protein.
          Length = 644

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = -2

Query: 282 CPF*TFSFIIDSFYINIENVHYVTYLLHYVIIKI--IEYLSNVMFCIKI 142
           C    F F+       I ++ YV YL+H+ +I I  I    + +FCI I
Sbjct: 272 CESKNFQFLKSPTLGYIGDISYVLYLVHWPVISIFLISNARSYIFCIMI 320


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,371,665
Number of Sequences: 27780
Number of extensions: 292648
Number of successful extensions: 659
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)