Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_L19
         (509 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    29   0.40 
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p...    28   0.93 
SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces p...    27   2.2  
SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom...    26   2.9  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    25   5.0  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   6.6  
SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit Prp1|...    25   6.6  
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar...    25   6.6  
SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr 3|||M...    25   8.7  

>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 29.1 bits (62), Expect = 0.40
 Identities = 18/53 (33%), Positives = 27/53 (50%)
 Frame = -2

Query: 160 FYVLYTEVIQYFLYGILIYLSLPSLFEGILIQILIPRNSYPTLTFCIFLQSPR 2
           F+ L   V   FL+ +   LSL  LF  +L+++    +  P L FC+ LQ  R
Sbjct: 158 FFFLCVCVFLSFLFSLSHLLSLAILFLPLLLRVFSTLSRLPRL-FCLCLQKKR 209


>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 275

 Score = 27.9 bits (59), Expect = 0.93
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +1

Query: 241 MRKQRPTPEYKTKRSPTLENRRKNSPVSDNKKGRSPSVHDRRKRSP 378
           +R + P+P     RSP  + R     +S   + RS S  D R RSP
Sbjct: 113 LRSRSPSPHEARSRSPYNDERSDRRSMSPRYRSRSRS-PDGRSRSP 157



 Score = 27.1 bits (57), Expect = 1.6
 Identities = 16/44 (36%), Positives = 20/44 (45%)
 Frame = +1

Query: 247 KQRPTPEYKTKRSPTLENRRKNSPVSDNKKGRSPSVHDRRKRSP 378
           KQ P     +KR    E   +    S   + RSPS H+ R RSP
Sbjct: 85  KQPPPSGPGSKRGGRRERGGRVHGDSGRLRSRSPSPHEARSRSP 128


>SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 301

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = +1

Query: 271 KTKRSPTLENRRKN--SPVSDNKKGRSPSVHDRRKRSP 378
           +T RS TL+ +R +  S    N+ GRSPS H R    P
Sbjct: 184 RTSRS-TLDRKRFHDASDTERNRYGRSPSPHSRFSEKP 220


>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -1

Query: 317 GLFFLLFSKVGLLFVLYS 264
           G F LLFS  GL+FV+Y+
Sbjct: 265 GTFELLFSSFGLVFVVYT 282


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = -1

Query: 326  SETGLFFLLFSKVGLLFVLYSGVGLCLRMYSE 231
            S   +FF+LF+ V ++++L   + + +  Y+E
Sbjct: 1187 SGNAMFFVLFNLVSMIYILTLFIAIIISNYAE 1218


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 4924

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -1

Query: 359 SCTDGLLPFLLSETGLFFLLFSKVGLLFVLYSGVGLC 249
           +C + ++P ++S +   F     VG+L +LYSG   C
Sbjct: 261 TCKNEVVPIMVSHSPALF-----VGILAILYSGNAYC 292


>SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit
           Prp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 906

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 14/49 (28%), Positives = 21/49 (42%)
 Frame = +1

Query: 244 RKQRPTPEYKTKRSPTLENRRKNSPVSDNKKGRSPSVHDRRKRSPSPGN 390
           + QR   E   K     EN + +S  +D K+G S    +     P PG+
Sbjct: 105 KSQREKQEQLQKEKYEKENPKVSSQFADLKRGLSTLTDEDWNNIPEPGD 153


>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
           Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +2

Query: 206 TREGKGARLRNTCV 247
           T+ GK +R+RNTCV
Sbjct: 216 TKFGKSSRIRNTCV 229


>SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 535

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 12/44 (27%), Positives = 18/44 (40%)
 Frame = +1

Query: 253 RPTPEYKTKRSPTLENRRKNSPVSDNKKGRSPSVHDRRKRSPSP 384
           +P P+  +   P      K   VS  +K  SP+ H  +    SP
Sbjct: 325 KPVPQPSSNEPPAPSAENKQPSVSSPEKKESPATHLLKVIGSSP 368


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.304    0.124    0.344 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,837,449
Number of Sequences: 5004
Number of extensions: 35856
Number of successful extensions: 67
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.9 bits)